FC930245

Overview
NameFC930245
Unique NameFC930245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig675 contig Ccv1_Contig675:14..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODM_KLEPL (Superoxide dismutase [Fe] (Fragment) OS=Klebsiella planticola GN=sodA PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 48/137 (35.04%), Postives = 59/137 (43.07%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            ++L   PY  +ALEPH+   T E H  KHH  YV NLN  + GTE  D K + D++       D LPA       NN     NH  FW                  I+  FGS             T+FGSGWAWL+
Sbjct:    3 YELPQLPYAYDALEPHIDAKTXEIHHSKHHNTYVTNLNAAVEGTEFAD-KDINDLIAML----DALPADKQTAVRNNGGGHANHTLFWEVIAPGGSNTPVGEVAKAIDAKFGSFDAFKEEFAKAATTRFGSGWAWLI 134          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 50/136 (36.76%), Postives = 63/136 (46.32%), Query Frame = 3
Query:  252 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDV--VIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            A+F   P PY  NAL+P + + T+E H+GKHH+AYVDNLN QI      D   L  +   I+ YN        NN    +NH FFW                   I +DFGS              +FGSGWAWL+
Sbjct:   23 AEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKTYPELDKTDLIQLQKQISKYNTA----VRNNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLI 154          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 47/132 (35.61%), Postives = 63/132 (47.73%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 653
            F L+  P+  +++   +S    +FH GKHH+ YV+NLN  I GT+  +  SL D++  S         FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y
Sbjct:    2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDF-EKSSLFDILTKSSG-----GVFNNAAQIYNHDFYWDCLSPKATALSDELKGAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAY 126          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 45/133 (33.83%), Postives = 59/133 (44.36%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PYP +ALEPH+ K+T+  H  KHH  YV NLN  + G      KSLE+++  + +  +       NN     NH  FW                  I + FGS              +FGSGWAWLV
Sbjct:    3 FELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLV 135          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 45/133 (33.83%), Postives = 59/133 (44.36%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PYP +ALEPH+ K+T+  H  KHH  YV NLN  + G      KSLE+++  + +  +       NN     NH  FW                  I + FGS              +FGSGWAWLV
Sbjct:    3 FELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLV 135          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 49/131 (37.40%), Postives = 60/131 (45.80%), Query Frame = 3
Query:  276 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-----NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            PY  +ALEPH  K+T+  H  KHH  Y+ NLN  + G  EL D KS+E++V    N  ++  A      NN     NH FFW                  IE  FGS             T+FGSGWAWLV
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELAD-KSVEELVA---NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLV 151          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 46/133 (34.59%), Postives = 62/133 (46.62%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PY  +ALEPH+ + T+E H GKHH  YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYGFDALEPHIDQQTMEIHHGKHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDAFKEEFADKAAARFGSGWAWLV 132          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 46/132 (34.85%), Postives = 62/132 (46.97%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 653
            F L+  P+  +++   +S    +FH GKHH+ YV+NLN  I GT+    KS    ++   + G     FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y
Sbjct:    2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDF--EKSSLFAILTKSSGG----VFNNAAQIYNHDFYWDCLSPKATALSDELKEAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAY 126          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 45/133 (33.83%), Postives = 57/133 (42.86%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PYP NALEPH+ + T+  H GKHH  YV  LN  + G      KS+E +V  + +  +       NN     NH  FW                  I  +FGS              +FGSGWAWLV
Sbjct:    3 FELPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSPNGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLV 135          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 46/133 (34.59%), Postives = 61/133 (45.86%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PY  +ALEPH+ K+T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHIDKETMEIHHDKHHNTYVTKLNAVVEGTDL-EAKSIEEIVANLDSVPSDIQTAVRNNGGGHLNHSLFWELLTPNSEEKGEVVEK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132          
The following BLAST results are available for this feature:
BLAST of FC930245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SODM_KLEPL6.952e-1535.04Superoxide dismutase [Fe] (Fragment) OS=Klebsiella... [more]
SODM_ACIAD6.952e-1536.76Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODF_HELPY6.952e-1535.61Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODM_BACST1.549e-1433.83Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODM_BACCA1.549e-1433.83Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM1_BACCR2.642e-1437.40Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM_STAXY3.450e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODF_HELPJ3.450e-1434.85Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODM_BACHD4.506e-1433.83Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM_STAEP5.885e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]

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Properties
Property NameValue
Genbank descriptionC34005D01EF PostHarvC1 Citrus clementina cDNA clone C34005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930245 ID=FC930245; Name=FC930245; organism=Citrus clementina; type=EST; length=680bp
GGCACTCACTTCGTAGTACCCCACACAAATCAAGAGTCAACCCAGTTCAC
ACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAA
TATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAA
TTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTT
CATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTC
TGCGAAATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGC
CACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGA
GCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGA
TGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACT
TGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTC
TGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCT
AGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAAT
TCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTA
TACAAAGCAATAATAGAGCTGATGTGGCTA
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