FC930248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SULIN (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eif6 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21 Identity = 68/201 (33.83%), Postives = 107/201 (53.23%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669 RL + +GV+ N + +V G S + + ++ +++ I + ++G GN NG+L P +T D E + L+ +L D V+ + +++ALGN I N+ AL + + + E+II + LGVE R+ +A I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL ND Sbjct: 5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVAND 200
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SULIL (Translation initiation factor 6 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eif6 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21 Identity = 68/201 (33.83%), Postives = 107/201 (53.23%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669 RL + +GV+ N + +V G S + + ++ +++ I + ++G GN NG+L P +T D E + L+ +L D V+ + +++ALGN I N+ AL + + + E+II + LGVE R+ +A I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL ND Sbjct: 5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVAND 200
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SULIM (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eif6 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20 Identity = 68/201 (33.83%), Postives = 107/201 (53.23%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669 RL + +GV+ N + +V G S + + ++ +++ I + ++G GN NG+L P +T D E + L+ +L D V+ + +++ALGN I N+ AL + + + E+II + LGVE R+ +A I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL ND Sbjct: 5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVAND 200
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20 Identity = 68/201 (33.83%), Postives = 107/201 (53.23%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669 RL + +GV+ N + +V G S + + ++ +++ I + ++G GN NG+L P +T D E + L+ +L D V+ + +++ALGN I N+ AL + + + E+II + LGVE R+ +A I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL ND Sbjct: 5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVAND 200
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20 Identity = 68/201 (33.83%), Postives = 107/201 (53.23%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669 RL + +GV+ N + +V G S + + ++ +++ I + ++G GN NG+L P +T D E + L+ +L D V+ + +++ALGN I N+ AL + + + E+II + LGVE R+ +A I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL ND Sbjct: 5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVAND 200
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.641e-20 Identity = 62/191 (32.46%), Postives = 97/191 (50.79%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669 +GV+ + + L+ +G F T +LA + V + TSI R+IG LC+ N G+L P T E L+ L +V V ++ +L+ALGN I ND A+ L +E + I+DVLGVE ++ +AG G +N G +HP ED+ S LL V + ++N G + +G+ N+ Sbjct: 14 IGVYISVNDNTILLPMG----FAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKTAYQNEFDFLKKELDLEVGV--LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAGFNQTGVVMVANNSGAAIHPEADEEDMKTFSNLLGVKIEQSSINNGIPYVSSGILANN 198
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.623e-20 Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 1 Query: 478 FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687 FR ++A N LVGSY +N+G +VHP T +D+DE+++LLQVP+VAGT+NRG+ IG+GL VNDW AFCG Sbjct: 4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVNDWAAFCG 73
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.144e-19 Identity = 59/195 (30.26%), Postives = 100/195 (51.28%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687 +GVF+++ + +V E + +E L + +V+T+I + IIG L VGN NGL+ T++E+ +L + + +EE ++A GN I NDH A H ++D E + ++D L V V T+ VG +N G +V P T+ ++ L + +P+ GTV G+ ++G GL N + G Sbjct: 13 IGVFTRVFDDIAVVPPDVPEEVTTRYEEALK--VEIVRTTIQRSPIIGSLLVGNNNGLVITGMATEEEIA----TLSEYRDLMLLEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVANRYGYLAG 201
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19 Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666 +GVF+ T LV + E E+ DV V++T + G+ ++G L GN NG + P+ E+Q + + V + +RL+A+GN + ND AL H DL + E IA L V+V+R T+AG VG +N+G LVHP + + + L + P+ GT N G++++G+GL N Sbjct: 13 IGVFATCTEDVVLVPPLTKPEVCALLE-EVLDV-RVIETLVNGSIVVGALSRGNSNGFMLPYGAR-AEMQRFTD-----IPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEREVLEKIFGFPVNIGTTNFGTQMLGSGLLAN 192
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_THEAC (Translation initiation factor 6 OS=Thermoplasma acidophilum GN=eif6 PE=3 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19 Identity = 56/188 (29.79%), Postives = 99/188 (52.66%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666 +G+++K + + + E + F+ L + V + SI + +IG + V N NGL+ P+ + L L D V +++++++A+GN I NDH A+ H + + + I D LGVE R T+ + VGS +++G LV+P T ++L+ L +V + +GT N GS +GA + N Sbjct: 13 IGIYAKAWDDVAFITMMADEKTVADFQEVLQ--VDVRRISIDNSSLIGTMMVMNSNGLIVPYGSEITGLGDL-----DGRNVLQLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVAN 193 The following BLAST results are available for this feature:
BLAST of FC930248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930248 ID=FC930248; Name=FC930248; organism=Citrus clementina; type=EST; length=688bpback to top |