FC930248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18 Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669 R F S +GVF++ T + LV + F + EL +P V+T++GG+ +G L GN +GLL + ++E + + V V + ++A GN + ND A H+ L + + + L V R +AG VG+ + G L HP + +L+ + L V GTVN G+ ++G+GL D Sbjct: 3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTDGVLCHPKATDAELERIEETLGVYADVGTVNYGAPLVGSGLVAAD 195
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18 Identity = 51/157 (32.48%), Postives = 85/157 (54.14%), Query Frame = 1 Query: 217 TSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687 TS+ R++G L V N +G++ P T ++ E + + VVV ++ + +ALGN I+ ND + RE IIAD LG+EV ++ +AG VG+ ++ GG++HP T ED+ +S ++ V + T+N G + +GL N + G Sbjct: 50 TSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAG 204
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18 Identity = 58/195 (29.74%), Postives = 92/195 (47.18%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687 +GV+ + F L+ E L+ + + S+ G R++G GN NGL+ P D EL+HL++ L +VV + R + +GN + ND+ +A L + + IAD LGVE + ++ VGS +NRG + P + E++ + L+V TVNRG + GL N A G Sbjct: 15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVG 206
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18 Identity = 61/188 (32.45%), Postives = 94/188 (50.00%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666 +GV++++ +V G F + EL + +V T I G+ IIG L GN GL+ TD+EL L + V ++ ++A GN I ND VA H ++ + E I L V V R T+ G VG +N+G LVHP + ++ L ++ +P+ G+VN GS ++G GL N Sbjct: 13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLAN 194
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18 Identity = 63/201 (31.34%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669 RL + +GV+ N+ LV S AE DV +V+T I + G L VGN NG++ P D+EL L N+L + V R + +ALGN + CN+ +A ++L+R+ I++ LGVE + + + GS +++GG++HP S ++ EL + +V TVN G I +GL N+ Sbjct: 5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANN 201
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18 Identity = 69/213 (32.39%), Postives = 111/213 (52.11%), Query Frame = 1 Query: 67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCG 687 M R F +GV + T L+ I + + E+++V+ ++T+IGG+ ++G L V NK GLL P D+EL ++N L + + V+ I+ + +ALGN I ND AL +L ++ ++ I D L VEV T+A VGS +N+G L HP ++L+ L +L +V + GT N+G+ +GA + N A G Sbjct: 3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVN----EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVG 210
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18 Identity = 61/198 (30.81%), Postives = 93/198 (46.97%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669 R F S VGVF++ + LV E EL + T++GG +G L GN+NG+L T++E + + +V + ++A GN + ND+ A H DL RE+ I + LGV V R + VG+ +N G L HP ++ +L + L V GT+N G+ +IG+GL D Sbjct: 3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEELG--AEPLLTTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATD 196
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18 Identity = 57/160 (35.62%), Postives = 89/160 (55.62%), Query Frame = 1 Query: 208 VVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687 V + ++ + ++G V N NG+L P ++E++ L +L V + I + +A+ N I + VAL L+ +++ADVLGVEV T+AGN LVG+ ++RG LV P + +DL +LS +V + GTVNRG + G+ VND A G Sbjct: 48 VARFTVARSPLLGIFTVVNDNGVLLPPLVLEEEVR-LFKALGLNVDI--INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVNDNGALVG 204
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18 Identity = 56/160 (35.00%), Postives = 87/160 (54.37%), Query Frame = 1 Query: 208 VVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687 V + ++ + ++G V N NG+L P ++E++ L +L V V + + +A+ N I + VAL L+ +++ADVLGVEV T+AGN LVGS ++RG LV P + EDL +L+ + GTVN+G + G+ VND A G Sbjct: 48 VARLTVAKSPLLGIFTVVNDNGVLLPPMVLEEEIR-LFKALGLNVEV--LNTKYTAISNLILAGNKVALVSPLLEPSVRKVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVNDHGALVG 204
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18 Identity = 61/200 (30.50%), Postives = 97/200 (48.50%), Query Frame = 1 Query: 67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666 M ++ NS +GV+++ N + + S+ FE L V K SIG + +IG + N NG++ D + +L++ + + I +L+A GN I NDH AL H + I DVLGVE + ++AG VGS ++RG LV +++ LS L ++ + GT N GS +GA + N Sbjct: 1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIV----VADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIAN 194 The following BLAST results are available for this feature:
BLAST of FC930248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930248 ID=FC930248; Name=FC930248; organism=Citrus clementina; type=EST; length=688bpback to top |