FC930248

Overview
NameFC930248
Unique NameFC930248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669
            R  F  S  +GVF++ T +  LV     + F  +   EL   +P V+T++GG+  +G L  GN +GLL  +   ++E   +  +    V V  +   ++A GN +  ND  A  H+ L  +    + + L V   R  +AG   VG+    +  G L HP  +  +L+ +   L V    GTVN G+ ++G+GL   D
Sbjct:    3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTDGVLCHPKATDAELERIEETLGVYADVGTVNYGAPLVGSGLVAAD 195          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 51/157 (32.48%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  217 TSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            TS+   R++G L V N +G++ P T ++ E +  +      VVV  ++ + +ALGN I+ ND   +      RE   IIAD LG+EV ++ +AG   VG+    ++ GG++HP T  ED+  +S ++ V +   T+N G   + +GL  N  +   G
Sbjct:   50 TSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAG 204          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 58/195 (29.74%), Postives = 92/195 (47.18%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            +GV+    + F L+     E         L+  +   + S+ G R++G    GN NGL+ P    D EL+HL++ L   +VV   + R + +GN +  ND+  +A   L +   + IAD LGVE  + ++     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N   A  G
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVG 206          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 61/188 (32.45%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666
            +GV++++     +V  G    F +    EL   + +V T I G+ IIG L  GN  GL+     TD+EL      L +   V  ++  ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++G GL  N
Sbjct:   13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLAN 194          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 63/201 (31.34%), Postives = 100/201 (49.75%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669
            RL    +  +GV+    N+  LV    S        AE  DV  +V+T I    + G L VGN NG++ P    D+EL  L N+L      + V R +   +ALGN + CN+   +A ++L+R+    I++ LGVE   + +    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +GL  N+
Sbjct:    5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANN 201          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 69/213 (32.39%), Postives = 111/213 (52.11%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCG 687
            M  R  F     +GV +  T    L+ I   +   +    E+++V+    ++T+IGG+ ++G L V NK GLL P    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   T+A    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  +GA +  N   A  G
Sbjct:    3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVN----EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVG 210          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 61/198 (30.81%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVND 669
            R  F  S  VGVF++  +   LV     E        EL      + T++GG   +G L  GN+NG+L     T++E   +  +   +V    +   ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +IG+GL   D
Sbjct:    3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEELG--AEPLLTTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATD 196          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 57/160 (35.62%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            V + ++  + ++G   V N NG+L P    ++E++ L  +L   V +  I  + +A+ N I   + VAL    L+    +++ADVLGVEV   T+AGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+ VND  A  G
Sbjct:   48 VARFTVARSPLLGIFTVVNDNGVLLPPLVLEEEVR-LFKALGLNVDI--INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVNDNGALVG 204          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18
Identity = 56/160 (35.00%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            V + ++  + ++G   V N NG+L P    ++E++ L  +L   V V  +  + +A+ N I   + VAL    L+    +++ADVLGVEV   T+AGN LVGS    ++RG LV P  + EDL +L+   +     GTVN+G   +  G+ VND  A  G
Sbjct:   48 VARLTVAKSPLLGIFTVVNDNGVLLPPMVLEEEIR-LFKALGLNVEV--LNTKYTAISNLILAGNKVALVSPLLEPSVRKVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVNDHGALVG 204          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18
Identity = 61/200 (30.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666
            M  ++   NS  +GV+++  N    + +  S+     FE  L     V K SIG + +IG +   N NG++      D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + ++AG   VGS    ++RG LV      +++  LS L ++ +  GT N GS  +GA +  N
Sbjct:    1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIV----VADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIAN 194          
The following BLAST results are available for this feature:
BLAST of FC930248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_HALS31.389e-1829.29Translation initiation factor 6 OS=Halobacterium s... [more]
IF6_CENSY1.389e-1832.48Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_THEPD1.815e-1829.74Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_METMJ1.815e-1832.45Translation initiation factor 6 OS=Methanoculleus ... [more]
IF6_STAMF3.095e-1831.34Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_METJA3.095e-1832.39Translation initiation factor 6 OS=Methanocaldococ... [more]
IF6_HALLT3.095e-1830.81Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_PYRAE5.280e-1835.63Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_PYRAR6.896e-1835.00Translation initiation factor 6 OS=Pyrobaculum ars... [more]
IF6_PICTO9.006e-1830.50Translation initiation factor 6 OS=Picrophilus tor... [more]

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Properties
Property NameValue
Genbank descriptionC34005D04EF PostHarvC1 Citrus clementina cDNA clone C34005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930248 ID=FC930248; Name=FC930248; organism=Citrus clementina; type=EST; length=688bp
GATCGCAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATT
CTGTTAATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTG
AGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATT
GGAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGT
TATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGC
TTTGTGTTGGTAACAAAAATGGGCTTCTCTCGCCACACACAACCACAGAC
CAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCA
GCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATG
ACCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATT
ATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAA
TATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCC
ACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAA
GTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGC
TGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGT
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