FC930248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17 Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 208 VVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 657 VV+T I + +IG + GN NG + T D+E N L + V R++ +++A GN I ND AL H L + E I L VEV R T+ G VG +N+G LVHP + E+L L L ++P+ GTV+ GS ++G+ + Sbjct: 46 VVRTLINESTLIGSMMTGNSNGFIVSDLTLDREA----NLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAI 191
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.536e-17 Identity = 57/202 (28.22%), Postives = 101/202 (50.00%), Query Frame = 1 Query: 61 VIMATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666 VI T +M S +G+++K + + E + F L + + + SI G+ +IG + N NG++ P+ + L + D V ++++++A+GN I NDH A+ H + + I D LGVE R ++ + VGS +++G LV+P T ++L+ L +V + +GT N GS +GA + N Sbjct: 3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVAN 195
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_ARCFU (Translation initiation factor 6 OS=Archaeoglobus fulgidus GN=eif6 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17 Identity = 51/188 (27.13%), Postives = 97/188 (51.60%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666 +G+++K++ + +V + E + +L + V+ T I G+ ++G + N G + EL+ L SL V IE ++ GN + ND +A+ +++ E +AD + +E+ + TV G VG +NRGGL +P+ + + +L + V ++ GTVN G++++G+GL N Sbjct: 11 IGLYAKVSEEYAVVGVN-HEPLIDAIQEKLD--VDVIVTKIAGSELVGAMMALNSRGAVVSDQVLSSELRELEKSLDVLV----IETPMTCFGNNLLINDRGGIANPEMESSVVEKVADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVAN 191
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17 Identity = 64/211 (30.33%), Postives = 107/211 (50.71%), Query Frame = 1 Query: 67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCG 687 M + F +GV S T + L + ++ + L IPV + +I + +IG LCVGN NGLL P+ T +E+ +++ L + V +++++ + +A GN I N+ + +L + ++I DVLGVE A VGS +++G LVHP T +L+ ++ +L+V V GT NRG +G+ + N A G Sbjct: 1 MIIKTYFSGVSTIGVLSLATEDYGLFPLSVEKNTLEKMKEVLN--IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSKEIALIKDFLKENSLDVNLEKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILANTKGAVIG 208
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17 Identity = 60/203 (29.56%), Postives = 102/203 (50.25%), Query Frame = 1 Query: 67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIGAGLTVN 666 M L +GV++++ +V + + F AE DV V++T + G+ +IG L GN G + D EL+ L+ D ++ + E ++A GN I ND A+ H D+ E++AD L V++ + AG VG C+ +N G L+ ++ E++++L + V + G+VN GS +IG GL +N Sbjct: 1 MDPTLSLNGDPNIGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLIN 197
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16 Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 208 VVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEV-FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666 +++T+I + ++G L GN + +L P T E++ ++ D V V+ ++ R +ALGN I N H AL + DL + L ++ + T+A I VGS +++ GLVH + E+L +LS L +V L +GTVN GS I +GL N Sbjct: 47 IIQTTISKSVLVGILVTGNNDVILLPRTALADEIKVIKEQAKD-VRVEVVDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVAN 199
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16 Identity = 59/199 (29.65%), Postives = 100/199 (50.25%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCG 687 +GV S T F L E+ + F+ L +PV +IG + +IG LC N G++ P T ++E L + L + ++V+ I + +A GN I ND + +L + + D+ VEV + +A VGS +N+G LVHP T+ E+L+ + +L++ + GT ++G+ +GA + N A G Sbjct: 13 IGVLSLSTEKFGLAPYFAEENTINKFKKVLD--VPVKALNIGNSSLIGALCCANSYGIILPPFTLNREKTILSDFLKENDIDIIVKEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVANSNGAVIG 208
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16 Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 1 Query: 160 ESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666 + TF+ E +++T+I + +IG GN N +L P D+E++ +++ D V V+ ++ R +ALGN I N + AL + +L + I + L ++ + + ++A I VGS +++ GLVH T+ E+LD+LS L +V + GTVN GS I +GL N Sbjct: 37 QKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDEEVKKIKDIARD-VRVEILDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIAN 199
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16 Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 1 Query: 202 IPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCG 687 IP + +I + +IG LCVGN NGLL P+ TT++EL+ ++ L + V ++R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N A G Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEKELELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANTKGAVVG 208
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16 Identity = 58/166 (34.94%), Postives = 89/166 (53.61%), Query Frame = 1 Query: 202 IPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCG 687 IP + +I + +IG LCVGN NGLL P TT++E++ ++ L + V ++R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N A G Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVG 208 The following BLAST results are available for this feature:
BLAST of FC930248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930248 ID=FC930248; Name=FC930248; organism=Citrus clementina; type=EST; length=688bpback to top |