FC930248

Overview
NameFC930248
Unique NameFC930248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 657
            VV+T I  + +IG +  GN NG +    T D+E     N L +   V R++ +++A GN I  ND  AL H  L  +  E I   L VEV R T+ G   VG     +N+G LVHP  + E+L  L  L ++P+  GTV+ GS ++G+ +
Sbjct:   46 VVRTLINESTLIGSMMTGNSNGFIVSDLTLDREA----NLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAI 191          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.536e-17
Identity = 57/202 (28.22%), Postives = 101/202 (50.00%), Query Frame = 1
Query:   61 VIMATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666
            VI  T +M   S  +G+++K  +    +     E   + F   L   + + + SI G+ +IG +   N NG++ P+ +    L  +     D   V  ++++++A+GN I  NDH A+ H     +  + I D LGVE  R ++   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA +  N
Sbjct:    3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVAN 195          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_ARCFU (Translation initiation factor 6 OS=Archaeoglobus fulgidus GN=eif6 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 51/188 (27.13%), Postives = 97/188 (51.60%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666
            +G+++K++  + +V +   E      + +L   + V+ T I G+ ++G +   N  G +        EL+ L  SL   V    IE  ++  GN +  ND   +A+ +++    E +AD + +E+ + TV G   VG     +NRGGL +P+ +  +  +L  +  V ++ GTVN G++++G+GL  N
Sbjct:   11 IGLYAKVSEEYAVVGVN-HEPLIDAIQEKLD--VDVIVTKIAGSELVGAMMALNSRGAVVSDQVLSSELRELEKSLDVLV----IETPMTCFGNNLLINDRGGIANPEMESSVVEKVADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVAN 191          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 64/211 (30.33%), Postives = 107/211 (50.71%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCG 687
            M  +  F     +GV S  T  + L  +   ++     +  L   IPV + +I  + +IG LCVGN NGLL P+  T +E+  +++ L +    V +++++ + +A GN I  N+   +   +L +   ++I DVLGVE      A    VGS    +++G LVHP T   +L+ ++ +L+V  V  GT NRG   +G+ +  N   A  G
Sbjct:    1 MIIKTYFSGVSTIGVLSLATEDYGLFPLSVEKNTLEKMKEVLN--IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSKEIALIKDFLKENSLDVNLEKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILANTKGAVIG 208          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 60/203 (29.56%), Postives = 102/203 (50.25%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIGAGLTVN 666
            M   L       +GV++++     +V +   + F     AE  DV  V++T + G+ +IG L  GN  G +      D EL+ L+    D ++   + E ++A GN I  ND  A+ H D+     E++AD L V++   + AG   VG  C+ +N G L+   ++ E++++L   +    V +  G+VN GS +IG GL +N
Sbjct:    1 MDPTLSLNGDPNIGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLIN 197          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEV-FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666
            +++T+I  + ++G L  GN + +L P T    E++ ++    D V V+ ++ R +ALGN I  N H AL + DL       +   L ++   + T+A  I VGS    +++ GLVH   + E+L +LS L +V L +GTVN GS  I +GL  N
Sbjct:   47 IIQTTISKSVLVGILVTGNNDVILLPRTALADEIKVIKEQAKD-VRVEVVDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVAN 199          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 59/199 (29.65%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCG 687
            +GV S  T  F L      E+  + F+  L   +PV   +IG + +IG LC  N  G++ P  T ++E   L + L +    ++V+ I  + +A GN I  ND   +   +L  +  +   D+  VEV  + +A    VGS    +N+G LVHP T+ E+L+ +  +L++  +  GT ++G+  +GA +  N   A  G
Sbjct:   13 IGVLSLSTEKFGLAPYFAEENTINKFKKVLD--VPVKALNIGNSSLIGALCCANSYGIILPPFTLNREKTILSDFLKENDIDIIVKEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVANSNGAVIG 208          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 1
Query:  160 ESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 666
            +    TF+ E      +++T+I  + +IG    GN N +L P    D+E++ +++   D V V+ ++ R +ALGN I  N + AL + +L     + I + L ++ + + ++A  I VGS    +++ GLVH  T+ E+LD+LS L +V +  GTVN GS  I +GL  N
Sbjct:   37 QKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDEEVKKIKDIARD-VRVEILDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIAN 199          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  202 IPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCG 687
            IP  + +I  + +IG LCVGN NGLL P+ TT++EL+ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N   A  G
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEKELELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANTKGAVVG 208          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 58/166 (34.94%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  202 IPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCG 687
            IP  + +I  + +IG LCVGN NGLL P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N   A  G
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVG 208          
The following BLAST results are available for this feature:
BLAST of FC930248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_UNCMA1.176e-1736.67Translation initiation factor 6 OS=Uncultured meth... [more]
IF6_THEVO1.536e-1728.22Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_ARCFU5.838e-1727.13Translation initiation factor 6 OS=Archaeoglobus f... [more]
IF6_METVS7.624e-1730.33Translation initiation factor 6 OS=Methanococcus v... [more]
IF6_METLZ7.624e-1729.56Translation initiation factor 6 OS=Methanocorpuscu... [more]
IF6_SULAC3.784e-1634.42Translation initiation factor 6 OS=Sulfolobus acid... [more]
IF6_META33.784e-1629.65Translation initiation factor 6 OS=Methanococcus a... [more]
IF6_SULTO4.942e-1632.94Translation initiation factor 6 OS=Sulfolobus toko... [more]
IF6_METMP4.942e-1635.54Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM66.454e-1634.94Translation initiation factor 6 OS=Methanococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC34005D04EF PostHarvC1 Citrus clementina cDNA clone C34005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930248 ID=FC930248; Name=FC930248; organism=Citrus clementina; type=EST; length=688bp
GATCGCAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATT
CTGTTAATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTG
AGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATT
GGAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGT
TATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGC
TTTGTGTTGGTAACAAAAATGGGCTTCTCTCGCCACACACAACCACAGAC
CAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCA
GCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATG
ACCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATT
ATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAA
TATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCC
ACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAA
GTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGC
TGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGT
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