FC930248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METM7 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eif6 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15 Identity = 58/166 (34.94%), Postives = 89/166 (53.61%), Query Frame = 1 Query: 202 IPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCG 687 IP + +I + +IG LCVGN NGLL P TT++E++ ++ L + V ++R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N A G Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVG 208
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15 Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 1 Query: 202 IPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 666 IP + +I + +IG LCVGN NGLL P TT++E++ ++ L + V ++R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILAN 201
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_METS3 (Translation initiation factor 6 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eif6 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13 Identity = 57/196 (29.08%), Postives = 95/196 (48.47%), Query Frame = 1 Query: 67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLL-SPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 651 M R+ ++ +GVF T+ +V + E L + VK+SI G +IG L V N NG++ SPH D+E++ + V I +A+GN +A ND A+ L E ++I D L V V ++ G+ ++GS + +N+G L+ + + ++D + V GTV RG ++GA Sbjct: 1 MLRRINIVDNPNIGVFILATDDLAVVPYNLLDEKVKLIEETLE--VDAVKSSISGCNLIGSLAVANSNGIVVSPHVL-DREVKQFEEL---GLNVATIPGNYTAVGNIVAANDTGAIVSPFLSDEAVKVIEDTLDVNVESTSMVGSDIIGSLITVTNKGFLMDKNATETEVDFARDVFGVEGDIGTVGRGISLVGA 190 The following BLAST results are available for this feature:
BLAST of FC930248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930248 ID=FC930248; Name=FC930248; organism=Citrus clementina; type=EST; length=688bpback to top |