FC930250

Overview
NameFC930250
Unique NameFC930250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPIG_XENTR (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Xenopus tropicalis GN=ppp1cc PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.892e-77
Identity = 132/170 (77.65%), Postives = 151/170 (88.82%), Query Frame = 2 
Query:  176 EMDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            ++D   +D +I+RLLEVRG KPGK VQL E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    3 DVDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1G_RAT (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Rattus norvegicus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.892e-77
Identity = 132/170 (77.65%), Postives = 151/170 (88.82%), Query Frame = 2 
Query:  176 EMDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            ++D   +D +I+RLLEVRG KPGK VQL E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    3 DIDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1G_MOUSE (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Mus musculus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.892e-77
Identity = 132/170 (77.65%), Postives = 151/170 (88.82%), Query Frame = 2 
Query:  176 EMDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            ++D   +D +I+RLLEVRG KPGK VQL E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    3 DIDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1G_BOVIN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Bos taurus GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.892e-77
Identity = 132/170 (77.65%), Postives = 151/170 (88.82%), Query Frame = 2 
Query:  176 EMDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            ++D   +D +I+RLLEVRG KPGK VQL E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    3 DIDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1GB_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit B OS=Xenopus laevis GN=ppp1cc-B PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.892e-77
Identity = 132/170 (77.65%), Postives = 151/170 (88.82%), Query Frame = 2 
Query:  176 EMDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            ++D   +D +I+RLLEVRG KPGK VQL E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    3 DVDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1GA_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit A OS=Xenopus laevis GN=ppp1cc-A PE=1 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 2.892e-77
Identity = 132/170 (77.65%), Postives = 151/170 (88.82%), Query Frame = 2 
Query:  176 EMDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            ++D   +D +I+RLLEVRG KPGK VQL E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    3 DVDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP13_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Nicotiana tabacum GN=NPP3 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.778e-77
Identity = 136/165 (82.42%), Postives = 149/165 (90.30%), Query Frame = 2 
Query:  179 MDPAVLDGVIRRLLEVRGK-PGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            MD A +D +I +L+EVR   PGK VQLSESEI+QLCV S+ IFL+QPNLLE EAPIK  GDIHGQYSDLLRLFEYGG PP +NYLFLGDYVDRG+QSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFNV+LWK FTDCFNCLPVAALIDE+
Sbjct:    1 MDTAAVDRIIEKLIEVRSSNPGKLVQLSESEIKQLCVASRDIFLKQPNLLESEAPIKTRGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGRQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVKLWKSFTDCFNCLPVAALIDEK 165
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1G_CANFA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Canis familiaris GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.415e-77
Identity = 131/170 (77.06%), Postives = 150/170 (88.24%), Query Frame = 2 
Query:  176 EMDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            ++D   +D +I+RLLEVRG KPGK VQL E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC S+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    3 DIDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECVSINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEEL (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis elegans GN=gsp-2 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.099e-76
Identity = 133/164 (81.10%), Postives = 147/164 (89.63%), Query Frame = 2 
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            LD +I RLLEVRG KPGK VQL+ESEI+ LC  S+ IFL QP LLE+EAP+KICGD+HGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLPVAA+IDE+   C
Sbjct:    8 LDNIISRLLEVRGSKPGKNVQLTESEIKGLCQKSREIFLSQPILLELEAPLKICGDVHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCC 171
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEBR (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis briggsae GN=gsp-2 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.099e-76
Identity = 133/164 (81.10%), Postives = 147/164 (89.63%), Query Frame = 2 
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            LD +I RLLEVRG KPGK VQL+ESEI+ LC  S+ IFL QP LLE+EAP+KICGD+HGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLPVAA+IDE+   C
Sbjct:    8 LDNIISRLLEVRGSKPGKNVQLTESEIKGLCQKSREIFLSQPILLELEAPLKICGDVHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCC 171
The following BLAST results are available for this feature:
BLAST of FC930250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PPIG_XENTR2.892e-7777.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_RAT2.892e-7777.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_MOUSE2.892e-7777.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_BOVIN2.892e-7777.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1GB_XENLA2.892e-7777.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1GA_XENLA2.892e-7777.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP13_TOBAC3.778e-7782.42Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP1G_CANFA8.415e-7777.06Serine/threonine-protein phosphatase PP1-gamma cat... [more]
GLC7B_CAEEL1.099e-7681.10Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
GLC7B_CAEBR1.099e-7681.10Serine/threonine-protein phosphatase PP1-beta OS=C... [more]

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Properties
Property NameValue
Genbank descriptionC34005D06EF PostHarvC1 Citrus clementina cDNA clone C34005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930250 ID=FC930250; Name=FC930250; organism=Citrus clementina; type=EST; length=682bp
AATTCTAACTCACCGAGGATGCTCCGTTCTTCTTTATTCTTCTTTACCTT
TTCTTCTTCTTCTTCTTTACTTTGTTCTCTCCTTCTTTTAAGATATTCTT
GAGATTGAATTCGGAGTGGAAACACAAAAAAGAAGAGGGAAGGGAGAAGA
GAAGAAGAGTGGTGTGAGAGTTCAAGAAATGGATCCTGCTGTTCTTGACG
GTGTGATCAGGAGGCTTCTTGAAGTCAGAGGCAAACCAGGGAAGCAAGTG
CAGTTATCTGAGTCTGAGATTAGGCAGCTTTGTGTTGTCTCTAAGGGTAT
TTTCTTGAGGCAGCCCAACCTTTTAGAGATTGAAGCTCCTATCAAGATCT
GTGGAGACATTCATGGTCAGTATTCTGATCTTCTGAGGCTTTTTGAATAT
GGTGGGTTACCTCCTCGTTCCAATTACTTATTCTTGGGGGATTATGTAGA
TCGTGGAAAACAAAGTCTGGAAACAATATGCCTTCTCCTTGCATATAAAA
TAAAATATCCGGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCT
TCGGTAAACCGTGTCTATGGATTTTATGATGAGTGTAAACGGAGATTCAA
TGTCAGACTTTGGAAAATATTCACTGATTGTTTCAACTGCCTGCCCGTGG
CAGCTCTTATTGATGAAAGATACTCTGCATGC
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