FC930250

Overview
NameFC930250
Unique NameFC930250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A3_ORYSI (Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A3 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.647e-38
Identity = 70/140 (50.00%), Postives = 99/140 (70.71%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            L+E E+R LC  +K I + + N+  +  P+ +CGDIHGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++Y +   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ ALI+ +
Sbjct:   21 LAEGEVRALCEQAKAILMEEWNVQPVRCPVTVCGDIHGQFYDLIELFRIGGEAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIENQ 160          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A1_ORYSJ (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.514e-38
Identity = 69/140 (49.29%), Postives = 99/140 (70.71%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            L E+E+R LC  +K I + + N+  +  P+ +CGDIHGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++Y +   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ AL++ +
Sbjct:   20 LGEAEVRALCEQAKAILMEEWNVQPVRCPVTVCGDIHGQFYDLIELFRIGGDSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVENQ 159          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A1_ORYSI (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.514e-38
Identity = 69/140 (49.29%), Postives = 99/140 (70.71%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            L E+E+R LC  +K I + + N+  +  P+ +CGDIHGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++Y +   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ AL++ +
Sbjct:   20 LGEAEVRALCEQAKAILMEEWNVQPVRCPVTVCGDIHGQFYDLIELFRIGGDSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVENQ 159          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A2_ERYGR (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Erysiphe graminis subsp. hordei GN=PP2A-2 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 73/162 (45.06%), Postives = 108/162 (66.67%), Query Frame = 2
Query:  188 AVLDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            + LDG I  L+  +       QL E ++ +LC  ++ +   + N+  ++ P+ +CGDIHGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A KI+YP+   +LRGNHE   + +VYGFYDEC R++ N  +WK FT+ F+ LP+ ALI+ +
Sbjct:   27 STLDGWIENLMACK-------QLPEVDVLRLCEKAREVLHSESNVQPVKCPVTVCGDIHGQFHDLMELFRIGGPNPDTNYLFMGDYVDRGYYSVETVTLLVALKIRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTNLFDFLPLTALIENQ 181          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A1_ARATH (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 73/160 (45.62%), Postives = 108/160 (67.50%), Query Frame = 2
Query:  194 LDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            LD  I +L+E +        L E++++ LC  +K I + + N+  ++ P+ +CGDIHGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++Y +   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ ALI+ +
Sbjct:    7 LDRQIEQLMECK-------PLGEADVKILCDQAKAILVEEYNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRLTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQ 159          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: YD44_SCHPO (Putative serine/threonine-protein phosphatase C22H10.04 OS=Schizosaccharomyces pombe GN=SPAC22H10.04 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 76/159 (47.80%), Postives = 107/159 (67.30%), Query Frame = 2
Query:  194 LDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDE 667
            LD +I RL E      KQ+ ++ES I  LC ++K + +++ N++ +  PI + GDIHGQ+ DLL +F  GG  P +NYLFLGDYVDRG  S+ETI LL+  K++YP+   LLRGNHE   + + YGFY EC R++ N  +WK FTD F+ L ++A ID+
Sbjct:    4 LDNIIERLYE------KQL-IAESVIAYLCSLAKEVLMQESNVVRLSTPITVVGDIHGQFDDLLEIFRIGGPCPYTNYLFLGDYVDRGYYSIETITLLICLKLRYPKRITLLRGNHESRGITQTYGFYSECLRKYGNANVWKYFTDIFDFLTLSATIDD 155          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPX4_PARTE (Serine/threonine-protein phosphatase PP-X homolog 4 OS=Paramecium tetraurelia GN=Ppx4 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.926e-37
Identity = 68/140 (48.57%), Postives = 103/140 (73.57%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            ++E E++ LC  ++ I + + N+  ++AP+ ICGDIHGQ+ DL+ LF+ GG  P +NYLFLGD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ ++ +W+  TD F+ L +AA+I+E+
Sbjct:   19 ITEGEVKALCTKAREILVEESNVQRVDAPVTICGDIHGQFFDLMELFKVGGDCPDTNYLFLGDFVDRGFNSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSLNVWRYCTDIFDYLSLAAVIEEK 158          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPX3_PARTE (Serine/threonine-protein phosphatase PP-X homolog 3 OS=Paramecium tetraurelia GN=Ppx3 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.926e-37
Identity = 68/140 (48.57%), Postives = 103/140 (73.57%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            ++E E++ LC  ++ I + + N+  ++AP+ ICGDIHGQ+ DL+ LF+ GG  P +NYLFLGD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ ++ +W+  TD F+ L +AA+I+E+
Sbjct:   19 ITEGEVKALCTKAREILVEESNVQRVDAPVTICGDIHGQFFDLMELFKVGGDCPDTNYLFLGDFVDRGFNSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSLNVWRYCTDIFDYLSLAAVIEEK 158          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A2_YEAST (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH22 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.926e-37
Identity = 68/140 (48.57%), Postives = 98/140 (70.00%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            LSE ++ +LC ++  +   + N+  I  P+ ICGD+HGQ+ DLL LF+ GG  P +NYLF+GDYVDRG  S+ET+  L+A K++YP    +LRGNHE   + +VYGFYDEC R++ +  +WK+FTD F+  PV AL+D +
Sbjct:   91 LSEDDVARLCKMAVDVLQFEENVKPINVPVTICGDVHGQFHDLLELFKIGGPCPDTNYLFMGDYVDRGYYSVETVSYLVAMKVRYPHRITILRGNHESRQITQVYGFYDECLRKYGSANVWKMFTDLFDYFPVTALVDNK 230          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPX2_PARTE (Serine/threonine-protein phosphatase PP-X homolog 2 OS=Paramecium tetraurelia GN=Ppx2 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37
Identity = 68/139 (48.92%), Postives = 102/139 (73.38%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFN-VRLWKIFTDCFNCLPVAALIDE 667
            L E++++ LC  +K I   + N++ +EAP+ ICGDIHGQ+ DL+ LF+ GG  P +NYLFLGD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R+++ + +WK  T+ F+ L +AA++++
Sbjct:   17 LKETDVKILCNKAKDILNNEDNVIRVEAPVTICGDIHGQFQDLMELFKVGGDVPETNYLFLGDFVDRGYNSVETFLLLLALKVRYPDQITLIRGNHESRQITQVYGFYDECLRKYSTLNVWKYCTEVFDYLALAAVVND 155          
The following BLAST results are available for this feature:
BLAST of FC930250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP2A3_ORYSI2.647e-3850.00Serine/threonine-protein phosphatase PP2A-3 cataly... [more]
PP2A1_ORYSJ4.514e-3849.29Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2A1_ORYSI4.514e-3849.29Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2A2_ERYGR7.700e-3845.06Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A1_ARATH7.700e-3845.63Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
YD44_SCHPO1.715e-3747.80Putative serine/threonine-protein phosphatase C22H... [more]
PPX4_PARTE2.926e-3748.57Serine/threonine-protein phosphatase PP-X homolog ... [more]
PPX3_PARTE2.926e-3748.57Serine/threonine-protein phosphatase PP-X homolog ... [more]
PP2A2_YEAST2.926e-3748.57Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PPX2_PARTE3.822e-3748.92Serine/threonine-protein phosphatase PP-X homolog ... [more]

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Properties
Property NameValue
Genbank descriptionC34005D06EF PostHarvC1 Citrus clementina cDNA clone C34005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930250 ID=FC930250; Name=FC930250; organism=Citrus clementina; type=EST; length=682bp
AATTCTAACTCACCGAGGATGCTCCGTTCTTCTTTATTCTTCTTTACCTT
TTCTTCTTCTTCTTCTTTACTTTGTTCTCTCCTTCTTTTAAGATATTCTT
GAGATTGAATTCGGAGTGGAAACACAAAAAAGAAGAGGGAAGGGAGAAGA
GAAGAAGAGTGGTGTGAGAGTTCAAGAAATGGATCCTGCTGTTCTTGACG
GTGTGATCAGGAGGCTTCTTGAAGTCAGAGGCAAACCAGGGAAGCAAGTG
CAGTTATCTGAGTCTGAGATTAGGCAGCTTTGTGTTGTCTCTAAGGGTAT
TTTCTTGAGGCAGCCCAACCTTTTAGAGATTGAAGCTCCTATCAAGATCT
GTGGAGACATTCATGGTCAGTATTCTGATCTTCTGAGGCTTTTTGAATAT
GGTGGGTTACCTCCTCGTTCCAATTACTTATTCTTGGGGGATTATGTAGA
TCGTGGAAAACAAAGTCTGGAAACAATATGCCTTCTCCTTGCATATAAAA
TAAAATATCCGGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCT
TCGGTAAACCGTGTCTATGGATTTTATGATGAGTGTAAACGGAGATTCAA
TGTCAGACTTTGGAAAATATTCACTGATTGTTTCAACTGCCTGCCCGTGG
CAGCTCTTATTGATGAAAGATACTCTGCATGC
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