FC930250

Overview
NameFC930250
Unique NameFC930250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEBR (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis briggsae GN=pph-4.1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 68/138 (49.28%), Postives = 97/138 (70.29%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            ++E +++ LC  ++ I   + N+  I++P+ ICGDIHGQ+ DL+ LF  GG  P +NYLFLGD+VDRG  S+ET  LLLA K +YP+   L+RGNHE   + +VYGFYDEC R++ N  +WK  T+ F+ L +AA+ID
Sbjct:   45 IAEQDVKTLCAKAREILAEEGNVQVIDSPVTICGDIHGQFYDLMELFRVGGPVPNTNYLFLGDFVDRGFYSVETFLLLLALKARYPDRMMLIRGNHESRQITQVYGFYDECMRKYGNASVWKHCTEVFDYLALAAVID 182
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C_XENTR (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus tropicalis GN=ppp4c PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 65/138 (47.10%), Postives = 99/138 (71.74%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + ESE++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF  GG  P +NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +V +W+  T+ F+ L ++A+ID
Sbjct:   20 IKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIID 157
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C_XENLA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus laevis GN=ppp4c PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 65/138 (47.10%), Postives = 99/138 (71.74%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + ESE++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF  GG  P +NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +V +W+  T+ F+ L ++A+ID
Sbjct:   20 IKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIID 157
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C_RAT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Rattus norvegicus GN=Ppp4c PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 65/138 (47.10%), Postives = 99/138 (71.74%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + ESE++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF  GG  P +NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +V +W+  T+ F+ L ++A+ID
Sbjct:   20 IKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIID 157
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C_RABIT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Oryctolagus cuniculus GN=PPP4C PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 65/138 (47.10%), Postives = 99/138 (71.74%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + ESE++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF  GG  P +NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +V +W+  T+ F+ L ++A+ID
Sbjct:   20 IKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIID 157
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C_PONAB (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Pongo abelii GN=PPP4C PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 65/138 (47.10%), Postives = 99/138 (71.74%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + ESE++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF  GG  P +NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +V +W+  T+ F+ L ++A+ID
Sbjct:   20 IKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIID 157
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C_MOUSE (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Mus musculus GN=Ppp4c PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 65/138 (47.10%), Postives = 99/138 (71.74%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + ESE++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF  GG  P +NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +V +W+  T+ F+ L ++A+ID
Sbjct:   20 IKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIID 157
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C_HUMAN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 65/138 (47.10%), Postives = 99/138 (71.74%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + ESE++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF  GG  P +NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +V +W+  T+ F+ L ++A+ID
Sbjct:   20 IKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIID 157
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C_BOVIN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Bos taurus GN=PPP4C PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 65/138 (47.10%), Postives = 99/138 (71.74%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + ESE++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF  GG  P +NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +V +W+  T+ F+ L ++A+ID
Sbjct:   20 IKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIID 157
[Close]
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C2_CAEEL (Serine/threonine-protein phosphatase 4 catalytic subunit 2 OS=Caenorhabditis elegans GN=pph-4.2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 66/138 (47.83%), Postives = 97/138 (70.29%), Query Frame = 2 
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + E++++ +C   + I + + N+  I+ P+ ICGDIHGQ+ DL+ LF  GG PP +NYLFLGDYVDRG  S+ET  LL+  K +YP+   L+RGNHE   + +VYGFYDEC R++ + ++WK  T+ F+ L +AA+ID
Sbjct:   30 ICETQVKSICAKVREILIEEANVQVIDTPVTICGDIHGQFHDLMELFRVGGSPPNTNYLFLGDYVDRGYNSVETFILLMLLKCRYPDRITLIRGNHESRQITQVYGFYDECVRKYGSGQVWKHCTEIFDYLSLAAVID 167
The following BLAST results are available for this feature:
BLAST of FC930250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP4C1_CAEBR7.207e-3649.28Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_XENTR9.413e-3647.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_XENLA9.413e-3647.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_RAT9.413e-3647.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_RABIT9.413e-3647.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_PONAB9.413e-3647.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_MOUSE9.413e-3647.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_HUMAN9.413e-3647.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_BOVIN9.413e-3647.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C2_CAEEL9.413e-3647.83Serine/threonine-protein phosphatase 4 catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionC34005D06EF PostHarvC1 Citrus clementina cDNA clone C34005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930250 ID=FC930250; Name=FC930250; organism=Citrus clementina; type=EST; length=682bp
AATTCTAACTCACCGAGGATGCTCCGTTCTTCTTTATTCTTCTTTACCTT
TTCTTCTTCTTCTTCTTTACTTTGTTCTCTCCTTCTTTTAAGATATTCTT
GAGATTGAATTCGGAGTGGAAACACAAAAAAGAAGAGGGAAGGGAGAAGA
GAAGAAGAGTGGTGTGAGAGTTCAAGAAATGGATCCTGCTGTTCTTGACG
GTGTGATCAGGAGGCTTCTTGAAGTCAGAGGCAAACCAGGGAAGCAAGTG
CAGTTATCTGAGTCTGAGATTAGGCAGCTTTGTGTTGTCTCTAAGGGTAT
TTTCTTGAGGCAGCCCAACCTTTTAGAGATTGAAGCTCCTATCAAGATCT
GTGGAGACATTCATGGTCAGTATTCTGATCTTCTGAGGCTTTTTGAATAT
GGTGGGTTACCTCCTCGTTCCAATTACTTATTCTTGGGGGATTATGTAGA
TCGTGGAAAACAAAGTCTGGAAACAATATGCCTTCTCCTTGCATATAAAA
TAAAATATCCGGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCT
TCGGTAAACCGTGTCTATGGATTTTATGATGAGTGTAAACGGAGATTCAA
TGTCAGACTTTGGAAAATATTCACTGATTGTTTCAACTGCCTGCCCGTGG
CAGCTCTTATTGATGAAAGATACTCTGCATGC
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