FC930250

Overview
NameFC930250
Unique NameFC930250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: FYPP3_ARATH (Phytochrome-associated serine/threonine protein phosphatase 3 OS=Arabidopsis thaliana GN=FYPP3 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 67/138 (48.55%), Postives = 96/138 (69.57%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            LSE E++ LC   K I + + N+  + +P+ +CGDIHGQ+ DL++LF+ GG  P +NY+F+GD+VDRG  SLE   +LL  K +YP N  LLRGNHE   + +VYGFYDEC+R++ N   W+  TD F+ L ++A+ID
Sbjct:   16 LSEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPDTNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIID 153          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPP6_DICDI (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Dictyostelium discoideum GN=ppp6c PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 69/138 (50.00%), Postives = 97/138 (70.29%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            L E+++++LC   K + L + N+  + +P+ ICGDIHGQ+ DLL LF+ GG  P +NY+F+GD+VDRG  SLET   LLA K +YP+   LLRGNHE   + +VYGFYDEC++++ NV  WK  T  F+ L +AA+ID
Sbjct:   20 LPENDLKKLCERVKELLLEESNVQPVRSPVTICGDIHGQFYDLLELFKTGGEVPDTNYVFMGDFVDRGYYSLETFTYLLALKARYPDKITLLRGNHESRQITQVYGFYDECQQKYGNVNAWKYCTSVFDFLTLAAIID 157          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4CB_DANRE (Serine/threonine-protein phosphatase 4 catalytic subunit B OS=Danio rerio GN=ppp4cb PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 64/138 (46.38%), Postives = 99/138 (71.74%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + E+E++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF  GG  P +NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +V +W+  T+ F+ L ++A+ID
Sbjct:   20 IKENEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIID 157          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: FYPP1_ARATH (Phytochrome-associated serine/threonine protein phosphatase 1 OS=Arabidopsis thaliana GN=FYPP1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 66/138 (47.83%), Postives = 96/138 (69.57%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            LSE E++ LC   K I + + N+  + +P+ +CGDIHGQ+ DL++LF+ GG  P +NY+F+GD+VDRG  SLE   +LL  K ++P N  LLRGNHE   + +VYGFYDEC+R++ N   W+  TD F+ L ++A+ID
Sbjct:   16 LSEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARHPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIID 153          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: FYPP_PEA (Phytochrome-associated serine/threonine protein phosphatase OS=Pisum sativum GN=FYPP PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 66/138 (47.83%), Postives = 95/138 (68.84%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            L E E++ LC   K I + + N+  + +P+ +CGDIHGQ+ DL++LF+ GG  P +NY+F+GD+VDRG  SLE   +LL  K +YP N  LLRGNHE   + +VYGFYDEC+R++ N   W+  TD F+ L ++A+ID
Sbjct:   16 LLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIID 153          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2AB_DICDI (Probable serine/threonine-protein phosphatase 2A catalytic subunit B OS=Dictyostelium discoideum GN=DDB_G0283187 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35
Identity = 69/139 (49.64%), Postives = 96/139 (69.06%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDE 667
            L ES I+++    K + + + N+ EI +P+ + GD+HGQ+ D+L +F+ GG  P +NYLFLGDYVDRG  S+ETI LL   K++YP    LLRGNHE   + +VYGFY EC R++ N  +WK FT+ F+ L VAA+IDE
Sbjct:   21 LPESTIKEITDKMKELLISESNVQEIRSPVTVVGDVHGQFYDVLEIFKIGGQCPDTNYLFLGDYVDRGYHSVETISLLTCLKLRYPSRITLLRGNHESRQITQVYGFYGECMRKYGNPTVWKYFTEMFDYLSVAAIIDE 159          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: BSL1_ORYSJ (Serine/threonine-protein phosphatase BSL1 homolog OS=Oryza sativa subsp. japonica GN=BSL1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35
Identity = 72/149 (48.32%), Postives = 102/149 (68.46%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRS------NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF----NVRLWKIFTDCFNCLPVAALIDER 670
            L   E+ +LC  ++ IF+++P +L+++APIK+ GD+HGQ+ DL+RLF+  G P  +      +YLFLGDYVDRG+ SLETI LLLA KI+YPEN  L+RGNHE A +N ++GF  EC  R      +  W  F   FN LP+AA+I+++
Sbjct:  552 LDSYEVGELCYAAEQIFMQEPTVLQLKAPIKVFGDLHGQFGDLMRLFDEYGYPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGESDGIWAWTRFNQLFNYLPLAAMIEKK 700          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP4C_DROME (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Drosophila melanogaster GN=Pp4-19C PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 63/138 (45.65%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            + E+E++ LC  ++ I + + N+  +++P+ +CGDIHGQ+ DL  LF+ GG  P  NYLF+GD+VDRG  S+ET  LLLA K++YP+   L+RGNHE   + +VYGFYDEC R++ +  +W+  T+ F+ L ++A+ID
Sbjct:   20 IKENEVKALCAKAREILVEEGNVQRVDSPVTVCGDIHGQFYDLKELFKVGGDVPEKNYLFMGDFVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSTAVWRYCTEIFDYLSLSAIID 157          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2BA_RAT (Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform OS=Rattus norvegicus GN=Ppp3ca PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 67/144 (46.53%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  242 KQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERY 673
            K+ +L ES   ++      I  ++ NLL+I+AP+ +CGDIHGQ+ DL++LFE GG P  + YLFLGDYVDRG  S+E +  L A KI YP+  FLLRGNHEC  +   + F  ECK +++ R++    D F+CLP+AAL+++++
Sbjct:   52 KEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQF 195          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2BA_MOUSE (Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform OS=Mus musculus GN=Ppp3ca PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 67/144 (46.53%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  242 KQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERY 673
            K+ +L ES   ++      I  ++ NLL+I+AP+ +CGDIHGQ+ DL++LFE GG P  + YLFLGDYVDRG  S+E +  L A KI YP+  FLLRGNHEC  +   + F  ECK +++ R++    D F+CLP+AAL+++++
Sbjct:   52 KEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQF 195          
The following BLAST results are available for this feature:
BLAST of FC930250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
FYPP3_ARATH9.413e-3648.55Phytochrome-associated serine/threonine protein ph... [more]
PPP6_DICDI1.606e-3550.00Serine/threonine-protein phosphatase 6 catalytic s... [more]
PP4CB_DANRE2.097e-3546.38Serine/threonine-protein phosphatase 4 catalytic s... [more]
FYPP1_ARATH2.097e-3547.83Phytochrome-associated serine/threonine protein ph... [more]
FYPP_PEA2.739e-3547.83Phytochrome-associated serine/threonine protein ph... [more]
PP2AB_DICDI4.672e-3549.64Probable serine/threonine-protein phosphatase 2A c... [more]
BSL1_ORYSJ4.672e-3548.32Serine/threonine-protein phosphatase BSL1 homolog ... [more]
PP4C_DROME6.101e-3545.65Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2BA_RAT6.101e-3546.53Serine/threonine-protein phosphatase 2B catalytic ... [more]
PP2BA_MOUSE6.101e-3546.53Serine/threonine-protein phosphatase 2B catalytic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005D06EF PostHarvC1 Citrus clementina cDNA clone C34005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930250 ID=FC930250; Name=FC930250; organism=Citrus clementina; type=EST; length=682bp
AATTCTAACTCACCGAGGATGCTCCGTTCTTCTTTATTCTTCTTTACCTT
TTCTTCTTCTTCTTCTTTACTTTGTTCTCTCCTTCTTTTAAGATATTCTT
GAGATTGAATTCGGAGTGGAAACACAAAAAAGAAGAGGGAAGGGAGAAGA
GAAGAAGAGTGGTGTGAGAGTTCAAGAAATGGATCCTGCTGTTCTTGACG
GTGTGATCAGGAGGCTTCTTGAAGTCAGAGGCAAACCAGGGAAGCAAGTG
CAGTTATCTGAGTCTGAGATTAGGCAGCTTTGTGTTGTCTCTAAGGGTAT
TTTCTTGAGGCAGCCCAACCTTTTAGAGATTGAAGCTCCTATCAAGATCT
GTGGAGACATTCATGGTCAGTATTCTGATCTTCTGAGGCTTTTTGAATAT
GGTGGGTTACCTCCTCGTTCCAATTACTTATTCTTGGGGGATTATGTAGA
TCGTGGAAAACAAAGTCTGGAAACAATATGCCTTCTCCTTGCATATAAAA
TAAAATATCCGGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCT
TCGGTAAACCGTGTCTATGGATTTTATGATGAGTGTAAACGGAGATTCAA
TGTCAGACTTTGGAAAATATTCACTGATTGTTTCAACTGCCTGCCCGTGG
CAGCTCTTATTGATGAAAGATACTCTGCATGC
back to top