FC930250

Overview
NameFC930250
Unique NameFC930250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP15_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 5 OS=Arabidopsis thaliana GN=TOPP5 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.875e-76
Identity = 136/166 (81.93%), Postives = 151/166 (90.96%), Query Frame = 2
Query:  179 MDPAVLDGVIRRLLEVRG-KPG-KQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            MDPAVLD +IRRLL+ R  K G KQ  L++SEIRQLC VS+ IFL+QP LLE+ AP+KICGDIHGQYSDLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFNV+LWK+FTD FNCLPVAA+IDE+
Sbjct:    9 MDPAVLDDIIRRLLDYRNPKAGTKQAMLNDSEIRQLCFVSREIFLQQPCLLELAAPVKICGDIHGQYSDLLRLFEYGGFPPAANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVKLWKVFTDTFNCLPVAAVIDEK 174          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1A_RAT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Rattus norvegicus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.455e-76
Identity = 130/164 (79.27%), Postives = 148/164 (90.24%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            LD +I RLLEV+G +PGK VQL+E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1A_RABIT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.455e-76
Identity = 130/164 (79.27%), Postives = 148/164 (90.24%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            LD +I RLLEV+G +PGK VQL+E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1A_HUMAN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.455e-76
Identity = 130/164 (79.27%), Postives = 148/164 (90.24%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            LD +I RLLEV+G +PGK VQL+E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1A_BOVIN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Bos taurus GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.455e-76
Identity = 130/164 (79.27%), Postives = 148/164 (90.24%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            LD +I RLLEV+G +PGK VQL+E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1B_XENTR (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus tropicalis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.124e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLISRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1B_XENLA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus laevis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.124e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLISRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1B_RAT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Rattus norvegicus GN=Ppp1cb PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.124e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1B_RABIT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.124e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1B_PONAB (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Pongo abelii GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.124e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
The following BLAST results are available for this feature:
BLAST of FC930250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP15_ARATH1.875e-7681.93Serine/threonine-protein phosphatase PP1 isozyme 5... [more]
PP1A_RAT5.455e-7679.27Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_RABIT5.455e-7679.27Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_HUMAN5.455e-7679.27Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_BOVIN5.455e-7679.27Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1B_XENTR7.124e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_XENLA7.124e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RAT7.124e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RABIT7.124e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_PONAB7.124e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]

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Properties
Property NameValue
Genbank descriptionC34005D06EF PostHarvC1 Citrus clementina cDNA clone C34005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930250 ID=FC930250; Name=FC930250; organism=Citrus clementina; type=EST; length=682bp
AATTCTAACTCACCGAGGATGCTCCGTTCTTCTTTATTCTTCTTTACCTT
TTCTTCTTCTTCTTCTTTACTTTGTTCTCTCCTTCTTTTAAGATATTCTT
GAGATTGAATTCGGAGTGGAAACACAAAAAAGAAGAGGGAAGGGAGAAGA
GAAGAAGAGTGGTGTGAGAGTTCAAGAAATGGATCCTGCTGTTCTTGACG
GTGTGATCAGGAGGCTTCTTGAAGTCAGAGGCAAACCAGGGAAGCAAGTG
CAGTTATCTGAGTCTGAGATTAGGCAGCTTTGTGTTGTCTCTAAGGGTAT
TTTCTTGAGGCAGCCCAACCTTTTAGAGATTGAAGCTCCTATCAAGATCT
GTGGAGACATTCATGGTCAGTATTCTGATCTTCTGAGGCTTTTTGAATAT
GGTGGGTTACCTCCTCGTTCCAATTACTTATTCTTGGGGGATTATGTAGA
TCGTGGAAAACAAAGTCTGGAAACAATATGCCTTCTCCTTGCATATAAAA
TAAAATATCCGGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCT
TCGGTAAACCGTGTCTATGGATTTTATGATGAGTGTAAACGGAGATTCAA
TGTCAGACTTTGGAAAATATTCACTGATTGTTTCAACTGCCTGCCCGTGG
CAGCTCTTATTGATGAAAGATACTCTGCATGC
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