FC930250

Overview
NameFC930250
Unique NameFC930250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPZ1_YEAST (Serine/threonine-protein phosphatase PP-Z1 OS=Saccharomyces cerevisiae GN=PPZ1 PE=1 SV=4)

HSP 1 Score: 218.779 bits (556), Expect = 2.155e-56
Identity = 104/161 (64.60%), Postives = 124/161 (77.02%), Query Frame = 2
Query:  185 PAVLDGVIRRLLEV--RGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALI 661
            P  +D  I++LL+     K  K V L  +EI Q+C+ ++ IFL QP+LLE+  P+KI GD+HGQY DLLRLF   G PP SNYLFLGDYVDRGKQSLETI LL  YKIKYPENFFLLRGNHECA+V RVYGFYDECKRR N+++WK F D FN LP+AA++
Sbjct:  360 PIDIDETIQKLLDAGYAAKRTKNVCLKNNEILQICIKAREIFLSQPSLLELSPPVKIVGDVHGQYGDLLRLFTKCGFPPSSNYLFLGDYVDRGKQSLETILLLFCYKIKYPENFFLLRGNHECANVTRVYGFYDECKRRCNIKIWKTFIDTFNTLPLAAIV 520          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPZ_SCHPO (Serine/threonine-protein phosphatase PP-Z OS=Schizosaccharomyces pombe GN=pzh1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.814e-56
Identity = 101/158 (63.92%), Postives = 124/158 (78.48%), Query Frame = 2
Query:  194 LDGVIRRLLEV--RGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALI 661
            +D +I+RL+ V    K  K V L  +EI  +C+  + IFL QP LLE+  P+KI GD+HGQYSDL+RLFE  G PP SNYLFLGDYVDRGKQSLETI LL  YKI+YPENFFLLRGNHECA++ RVYGFYDECKRR N+++WK F + FNCLP+A+++
Sbjct:  192 VDEMIQRLIHVGYSRKSSKSVCLKNAEITSICMAVREIFLSQPTLLELTPPVKIVGDVHGQYSDLIRLFEMCGFPPSSNYLFLGDYVDRGKQSLETILLLFLYKIRYPENFFLLRGNHECANITRVYGFYDECKRRCNIKIWKTFINTFNCLPIASVV 349          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPZ2_YEAST (Serine/threonine-protein phosphatase PP-Z2 OS=Saccharomyces cerevisiae GN=PPZ2 PE=1 SV=4)

HSP 1 Score: 216.853 bits (551), Expect = 8.189e-56
Identity = 105/167 (62.87%), Postives = 127/167 (76.05%), Query Frame = 2
Query:  167 RVQEMDPAVLDGVIRRLLEV--RGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALI 661
            R + + P  +D +I+RLL+     K  K V L  SEI Q+C  ++ +FL QP LLE+   +KI GD+HGQY+DLLRLF   G PP +NYLFLGDYVDRGKQSLETI LLL YKIKYPENFFLLRGNHECA+V RVYGFYDECKRR N+++WK F D FN LP+AA++
Sbjct:  389 RKKPVRPVDIDEIIQRLLDAGYAAKRTKNVCLKNSEIIQICHKARELFLAQPALLELSPSVKIVGDVHGQYADLLRLFTKCGFPPMANYLFLGDYVDRGKQSLETILLLLCYKIKYPENFFLLRGNHECANVTRVYGFYDECKRRCNIKIWKTFVDTFNTLPLAAIV 555          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPY_DROME (Serine/threonine-protein phosphatase PP-Y OS=Drosophila melanogaster GN=PpY-55A PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.634e-54
Identity = 100/163 (61.35%), Postives = 123/163 (75.46%), Query Frame = 2
Query:  194 LDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I+ L  + G    +  L E  I +L   ++ +   QP LLE++AP+ ICGDIHGQ++DLLR+F+  G PP++NYLFLGDYVDRGKQSLETICLL AYK+KYP NFFLLRGNHE AS+N++YGFYDE KRR  VRLW  FTDCFN LPVAAL+ ER   C
Sbjct:    9 IDCIIKELTSLNGS---ECTLKEELIERLIQQTREVIKWQPMLLELQAPVNICGDIHGQFTDLLRIFKACGFPPKANYLFLGDYVDRGKQSLETICLLFAYKVKYPLNFFLLRGNHESASINKIYGFYDEIKRRHTVRLWHSFTDCFNWLPVAALVGERIFCC 168          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1_BRANA (Serine/threonine-protein phosphatase PP1 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51
Identity = 90/106 (84.91%), Postives = 98/106 (92.45%), Query Frame = 2
Query:  353 GDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            GDIHGQY DLLRLFEYGG PP +N+LFLGDYVDRGKQSLETICLLLAYKI+YP   +LLRGNHE A +NR+YGFYDECKRRFNVRLWKIFTDCFNCLPVAALID++
Sbjct:    1 GDIHGQYQDLLRLFEYGGYPPSANFLFLGDYVDRGKQSLETICLLLAYKIRYPSKIYLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDDK 106          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PPQ1_YEAST (Serine/threonine-protein phosphatase PPQ OS=Saccharomyces cerevisiae GN=PPQ1 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.072e-47
Identity = 89/166 (53.61%), Postives = 120/166 (72.29%), Query Frame = 2
Query:  194 LDGVIRRLLEV-------RGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            +D  I +LL+V       +    K       EI+ +C  ++ IFL QP LL ++APIK+ GD+HGQ++DLLR+ +  G+P  +NYLFLGDYVDRGK SLETI LLL YKIKY +NFF+LRGNHE A+V ++YGFYDECKRR + ++WK+F D FN LP+AA+I ++
Sbjct:  240 IDVAIEKLLQVGESREITKTSKKKNFPFHSWEIQLICYHAREIFLNQPTLLRLQAPIKVVGDVHGQFNDLLRILKLSGVPSDTNYLFLGDYVDRGKNSLETILLLLCYKIKYKDNFFMLRGNHESANVTKMYGFYDECKRRLSSKVWKMFVDVFNTLPLAAIIQDK 405          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2AA_CHICK (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Gallus gallus GN=PPP2CA PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-42
Identity = 80/158 (50.63%), Postives = 109/158 (68.99%), Query Frame = 2
Query:  194 LDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            LD  I +L E R       QLSES++R LC  +K I  ++ N+ E+  P+ +CGD+HGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++YPE   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ AL+D
Sbjct:   10 LDQWIEQLNECR-------QLSESQVRSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A3_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 3 OS=Paramecium tetraurelia GN=Ppn3 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.340e-41
Identity = 74/140 (52.86%), Postives = 107/140 (76.43%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            L+ESEI+ LC+ +K I   +PN++++ AP+ ICGDIHGQ+ DL+ LF+ GG  P +NYLFLGDYVDRG QS+ET  L+L+ K++Y +   LLRGNHE   +N+VYGFYDEC R++ N  +WK FT+ F  LP++A+++++
Sbjct:   28 LTESEIKSLCIKAKEILSDEPNIIQVRAPLTICGDIHGQFHDLIELFQIGGNLPDTNYLFLGDYVDRGSQSVETFSLMLSLKVRYKDRIVLLRGNHENREINKVYGFYDECFRKYGNEIVWKQFTEVFGYLPLSAIVEQQ 167          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2AB_RAT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Rattus norvegicus GN=Ppp2cb PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.362e-41
Identity = 72/139 (51.80%), Postives = 102/139 (73.38%), Query Frame = 2
Query:  251 QLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            QL+E+++R LC  +K I  ++ N+ E+  P+ +CGD+HGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++YPE   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ AL+D
Sbjct:   22 QLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2AB_RABIT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Oryctolagus cuniculus GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.362e-41
Identity = 72/139 (51.80%), Postives = 102/139 (73.38%), Query Frame = 2
Query:  251 QLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            QL+E+++R LC  +K I  ++ N+ E+  P+ +CGD+HGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++YPE   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ AL+D
Sbjct:   22 QLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          
The following BLAST results are available for this feature:
BLAST of FC930250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PPZ1_YEAST2.155e-5664.60Serine/threonine-protein phosphatase PP-Z1 OS=Sacc... [more]
PPZ_SCHPO2.814e-5663.92Serine/threonine-protein phosphatase PP-Z OS=Schiz... [more]
PPZ2_YEAST8.189e-5662.87Serine/threonine-protein phosphatase PP-Z2 OS=Sacc... [more]
PPY_DROME2.634e-5461.35Serine/threonine-protein phosphatase PP-Y OS=Droso... [more]
PP1_BRANA2.087e-5184.91Serine/threonine-protein phosphatase PP1 (Fragment... [more]
PPQ1_YEAST1.072e-4753.61Serine/threonine-protein phosphatase PPQ OS=Saccha... [more]
PP2AA_CHICK3.946e-4250.63Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A3_PARTE3.340e-4152.86Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2AB_RAT4.362e-4151.80Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_RABIT4.362e-4151.80Serine/threonine-protein phosphatase 2A catalytic ... [more]

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Properties
Property NameValue
Genbank descriptionC34005D06EF PostHarvC1 Citrus clementina cDNA clone C34005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930250 ID=FC930250; Name=FC930250; organism=Citrus clementina; type=EST; length=682bp
AATTCTAACTCACCGAGGATGCTCCGTTCTTCTTTATTCTTCTTTACCTT
TTCTTCTTCTTCTTCTTTACTTTGTTCTCTCCTTCTTTTAAGATATTCTT
GAGATTGAATTCGGAGTGGAAACACAAAAAAGAAGAGGGAAGGGAGAAGA
GAAGAAGAGTGGTGTGAGAGTTCAAGAAATGGATCCTGCTGTTCTTGACG
GTGTGATCAGGAGGCTTCTTGAAGTCAGAGGCAAACCAGGGAAGCAAGTG
CAGTTATCTGAGTCTGAGATTAGGCAGCTTTGTGTTGTCTCTAAGGGTAT
TTTCTTGAGGCAGCCCAACCTTTTAGAGATTGAAGCTCCTATCAAGATCT
GTGGAGACATTCATGGTCAGTATTCTGATCTTCTGAGGCTTTTTGAATAT
GGTGGGTTACCTCCTCGTTCCAATTACTTATTCTTGGGGGATTATGTAGA
TCGTGGAAAACAAAGTCTGGAAACAATATGCCTTCTCCTTGCATATAAAA
TAAAATATCCGGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCT
TCGGTAAACCGTGTCTATGGATTTTATGATGAGTGTAAACGGAGATTCAA
TGTCAGACTTTGGAAAATATTCACTGATTGTTTCAACTGCCTGCCCGTGG
CAGCTCTTATTGATGAAAGATACTCTGCATGC
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