FC930250

Overview
NameFC930250
Unique NameFC930250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2AA_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Bos taurus GN=PPP2CA PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.658e-40
Identity = 72/139 (51.80%), Postives = 101/139 (72.66%), Query Frame = 2
Query:  251 QLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            QLSES+++ LC  +K I  ++ N+ E+  P+ +CGD+HGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++Y E   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ AL+D
Sbjct:   22 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A2_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 2 OS=Paramecium tetraurelia GN=Ppn2 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.658e-40
Identity = 71/140 (50.71%), Postives = 106/140 (75.71%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            L+E E++ LC+ +K I   +PN++++ AP+ ICGDIHGQ+ DL+ LF+ GG  P +NYLFLGDYVDRG QS+ET  L+L+ K++Y +   LLRGNHE   +N++YGFYDEC R++ N  +WK FT+ F  LP++A+++++
Sbjct:   28 LTEQEVKSLCIKAKEILQDEPNIIQVRAPLTICGDIHGQFHDLIELFQIGGNLPDTNYLFLGDYVDRGSQSVETFSLMLSLKVRYKDRIVLLRGNHENREINKIYGFYDECFRKYGNEIVWKQFTEVFGYLPLSAIVEQQ 167          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSI (Putative serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A4 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.693e-40
Identity = 76/158 (48.10%), Postives = 110/158 (69.62%), Query Frame = 2
Query:  194 LDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            LD  I +L+E R        LSE+E++ LC  +K I + + N+  +++P+ ICGDIHGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   + +VYGFYDEC R++ +  +WKIFTD F+  P+ AL++
Sbjct:   16 LDAQIEQLMECR-------PLSETEVKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVE 166          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A_DROME (Serine/threonine-protein phosphatase PP2A OS=Drosophila melanogaster GN=mts PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.299e-40
Identity = 71/139 (51.08%), Postives = 102/139 (73.38%), Query Frame = 2
Query:  251 QLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            QL+E+++R LC  +K I  ++ N+ E++ P+ +CGD+HGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++Y E   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ AL+D
Sbjct:   22 QLTETQVRTLCDKAKEILSKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSJ (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.299e-40
Identity = 76/158 (48.10%), Postives = 109/158 (68.99%), Query Frame = 2
Query:  194 LDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            LD  I +L+E R        LSE E++ LC  +K I + + N+  +++P+ ICGDIHGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   + +VYGFYDEC R++ +  +WKIFTD F+  P+ AL++
Sbjct:   15 LDAQIEQLMECR-------PLSEPEVKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVE 165          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A1_NEUCR (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Neurospora crassa GN=pph-1 PE=3 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 6.299e-40
Identity = 76/160 (47.50%), Postives = 110/160 (68.75%), Query Frame = 2
Query:  194 LDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            LDG I  L+  +       QL+ES++++LC  ++ +   + N+  ++ P+ +CGDIHGQ+ DL+ LF+ GG  P +NYLF+GDYVDRG  S+ET+ LL+A KI+YP    +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+ LP+ ALID +
Sbjct:   28 LDGWIESLMNCK-------QLAESDVQRLCEKAREVLQDESNVQPVKCPVTVCGDIHGQFHDLMELFKIGGSCPDTNYLFMGDYVDRGYYSVETVTLLVALKIRYPNRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIDNQ 180          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A1_SCHPO (Minor serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Schizosaccharomyces pombe GN=ppa1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 70/140 (50.00%), Postives = 102/140 (72.86%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDER 670
            LSE ++ Q+C ++K +   + N+  +  P+ +CGDIHGQ+ DL+ LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A+KI+YP+   +LRGNHE   + +VYGFYDEC R++ N  +W+ FTD F+ LP+ ALI++R
Sbjct:   23 LSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFHDLMELFNIGGPSPDTNYLFMGDYVDRGYHSVETVSLLIAFKIRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWQYFTDLFDYLPLTALIEDR 162          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A4_ARATH (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Arabidopsis thaliana GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 71/138 (51.45%), Postives = 101/138 (73.19%), Query Frame = 2
Query:  254 LSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            LSE ++R LC  +K I + + N+  +++P+ ICGDIHGQ+ DL  LF  GG+ P +NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   + +VYGFYDEC R++ N  +WKIFTD F+  P+ AL++
Sbjct:   27 LSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGMCPDTNYLFMGDYVDRGYYSVETVTLLVALKMRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 164          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A2_ORYSJ (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.126e-39
Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = 2
Query:  194 LDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            LD  I RL++ +  P       E E+R LC  +K I + + N+  +++P+ ICGDIHGQ+ DL  LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+  P+ AL++
Sbjct:    8 LDDQIERLMQCKPLP-------EPEVRALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALVE 158          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP2A2_ORYSI (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A2 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.126e-39
Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = 2
Query:  194 LDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALID 664
            LD  I RL++ +  P       E E+R LC  +K I + + N+  +++P+ ICGDIHGQ+ DL  LF  GG  P +NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   + +VYGFYDEC R++ N  +WK FTD F+  P+ AL++
Sbjct:    8 LDDQIERLMQCKPLP-------EPEVRALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALVE 158          
The following BLAST results are available for this feature:
BLAST of FC930250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP2AA_BOVIN1.658e-4051.80Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A2_PARTE1.658e-4050.71Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A4_ORYSI3.693e-4048.10Putative serine/threonine-protein phosphatase PP2A... [more]
PP2A_DROME6.299e-4051.08Serine/threonine-protein phosphatase PP2A OS=Droso... [more]
PP2A4_ORYSJ6.299e-4048.10Serine/threonine-protein phosphatase PP2A-4 cataly... [more]
PP2A1_NEUCR6.299e-4047.50Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A1_SCHPO1.403e-3950.00Minor serine/threonine-protein phosphatase PP2A-1 ... [more]
PP2A4_ARATH2.394e-3951.45Serine/threonine-protein phosphatase PP2A-4 cataly... [more]
PP2A2_ORYSJ3.126e-3947.47Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A2_ORYSI3.126e-3947.47Serine/threonine-protein phosphatase PP2A-2 cataly... [more]

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Properties
Property NameValue
Genbank descriptionC34005D06EF PostHarvC1 Citrus clementina cDNA clone C34005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930250 ID=FC930250; Name=FC930250; organism=Citrus clementina; type=EST; length=682bp
AATTCTAACTCACCGAGGATGCTCCGTTCTTCTTTATTCTTCTTTACCTT
TTCTTCTTCTTCTTCTTTACTTTGTTCTCTCCTTCTTTTAAGATATTCTT
GAGATTGAATTCGGAGTGGAAACACAAAAAAGAAGAGGGAAGGGAGAAGA
GAAGAAGAGTGGTGTGAGAGTTCAAGAAATGGATCCTGCTGTTCTTGACG
GTGTGATCAGGAGGCTTCTTGAAGTCAGAGGCAAACCAGGGAAGCAAGTG
CAGTTATCTGAGTCTGAGATTAGGCAGCTTTGTGTTGTCTCTAAGGGTAT
TTTCTTGAGGCAGCCCAACCTTTTAGAGATTGAAGCTCCTATCAAGATCT
GTGGAGACATTCATGGTCAGTATTCTGATCTTCTGAGGCTTTTTGAATAT
GGTGGGTTACCTCCTCGTTCCAATTACTTATTCTTGGGGGATTATGTAGA
TCGTGGAAAACAAAGTCTGGAAACAATATGCCTTCTCCTTGCATATAAAA
TAAAATATCCGGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCT
TCGGTAAACCGTGTCTATGGATTTTATGATGAGTGTAAACGGAGATTCAA
TGTCAGACTTTGGAAAATATTCACTGATTGTTTCAACTGCCTGCCCGTGG
CAGCTCTTATTGATGAAAGATACTCTGCATGC
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