FC930251

Overview
NameFC930251
Unique NameFC930251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.837e-25
Identity = 76/204 (37.25%), Postives = 112/204 (54.90%), Query Frame = 1
Query:   49 VLSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI--KNPQGLFKIHHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            ++  K   LK +  G+P  +D  +K + +   ++ G   +L++ L+L+ DPYMR      ++        G  + G  VAKVV+S +    KG +V  + GW  +S+   K+ + L       +PLS   G +GMPG+TA  G  EIC  K GE + V+A +GAVG +VGQ AK+ G  VVG+ GS  KV  L+K LGFD  FN
Sbjct:    1 MVRTKTWTLKKHFVGYPTNSDFELKTAELP-PLKNGE--VLLEALFLTVDPYMRVAAKRLKE--------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQK-LGFDVVFN 192          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 75/200 (37.50%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   61 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI--KNPQGLFKIHHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            K   LK +  G+P  ++  +K   +   ++ G   +L++ L+L+ DPYMR                G  + G  VA+V++S +  F  G +V    GW  +S+   KN + L       +PLS   G +GMPG+TA  G  +IC  K GE + V+A +GAVG +VGQ AK+ G  VVG+AGS  KV  LKK  GFD AFN
Sbjct:    5 KSWTLKKHFVGYPTPSNFELKTVELP-PLKNGE--VLLEALFLTVDPYMRIAAR--------KLKEGDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLKK-YGFDVAFN 192          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.410e-17
Identity = 68/196 (34.69%), Postives = 96/196 (48.98%), Query Frame = 1
Query:   91 GFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTA*AGFYE--ICAPKKGEYIYVSATSGAVGQIVGQFAKMMG-SYVVGSAGSRIKVELLKKQLGFDDAFN 654
            G P   +  V+  ++   V EG   + V+ LYLS DPYMR RM  N+D      TP      ++G GV  + +S H  F KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E         + + VS  +GA G + GQ  +++G S VVG  G+  K   L  +LGFD A N
Sbjct:   16 GHPVAENFRVEEVNLPDCVNEGQ--VQVRTLYLSVDPYMRCRM--NEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAIN 207          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 63/178 (35.39%), Postives = 88/178 (49.44%), Query Frame = 1
Query:  145 VEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTA*AGFYE--ICAPKKGEYIYVSATSGAVGQIVGQFAKMMG-SYVVGSAGSRIKVELLKKQLGFDDAFN 654
            + EG   + V+ LYLS DPYMR RM  N+D      TP      ++G G+  + +S H    KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E         + + VS  +GA G + GQ   ++G S VVG  G+  K  LL  +LGFD A N
Sbjct:   34 INEGQ--VQVRTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAAIN 207          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.996e-17
Identity = 64/194 (32.99%), Postives = 97/194 (50.00%), Query Frame = 1
Query:   91 GFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDF-SSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTA*AGFYE--ICAPKKGEYIYVSATSGAVGQIVGQFAKMMG-SYVVGSAGSRIKVELLKKQLGFDDAFN 654
            G P   +  V+  S+   + EG   + V+ LYLS DPYMR +M+ +   D+ + +      +G G+  V +S H +  KGD V       +   I +  GL K+     D  LSY+ G +GMPG+T+  G  E    +    + + VS  +GA G + GQ   ++G S VVG  G++ K   L  +LGFD A N
Sbjct:   16 GNPVAENFRVEEFSLPDALNEGQ--VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVN 207          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.996e-17
Identity = 63/178 (35.39%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  145 VEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTA*AGFYE--ICAPKKGEYIYVSATSGAVGQIVGQFAKMMG-SYVVGSAGSRIKVELLKKQLGFDDAFN 654
            + EG   + V+ LYLS DPYMR RM  N+D      TP      ++G G+  + +S H    KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E         + + VS  +GA G + GQ    +G S VVG  G+  K  LL  +LGFD A N
Sbjct:   34 INEGQ--VQVRTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAIN 207          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.193e-16
Identity = 64/194 (32.99%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   91 GFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDF-SSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKG--EYIYVSATSGAVGQIVGQFAKMMG-SYVVGSAGSRIKVELLKKQLGFDDAFN 654
            G P   +  V+  S+   + EG   + V+ LYLS DPYMR +M+     D+ + +      +G G+  + +S H +  KGD V       +   I +  GL K+     D  LSY+ G +GMPG+T+  G  E      G  + + VS  +GA G + GQ   ++G S VVG  G+  K   L  +LGFD A N
Sbjct:   16 GNPVAENFRVEEVSLPDTINEGQ--VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELGFDAAVN 207          
The following BLAST results are available for this feature:
BLAST of FC930251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PTGR1_HUMAN1.837e-2537.25Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_PIG3.464e-2437.50Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR2_BOVIN1.410e-1734.69Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB3.140e-1735.39Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_MOUSE6.996e-1732.99Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
PTGR2_HUMAN6.996e-1735.39Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_RAT1.193e-1632.99Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005D07EF PostHarvC1 Citrus clementina cDNA clone C34005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930251 ID=FC930251; Name=FC930251; organism=Citrus clementina; type=EST; length=655bp
AGAGTGAAACAAGGAAGAAACAGAGCAACGATGGCGGCTAACAGTGAAGT
GTTGAGCAACAAGCAGGTGATATTAAAGAACTATGTAGAAGGGTTTCCCA
AAGAGACAGACATGTTGGTAAAAGCAAGTTCAATTTCATTGAAAGTAGAG
GAAGGCTCAAATGCAATTCTCGTCAAGAATCTTTACTTGTCTTGCGATCC
TTACATGAGAGCTCGAATGTCCTTTAATCAAGATCCTGATTTCTCTTCTT
TCACTCCTGGCTCTCCCATAGAAGGATTTGGAGTGGCTAAGGTGGTGGAT
TCAGGGCACCCAGAATTCAAGAAAGGAGATTTAGTCTGGGGAACAACTGG
GTGGGAAGAGTATAGTCTCATAAAAAATCCTCAGGGCCTCTTTAAAATTC
ATCACACTGATGTTCCCCTTTCTTATTATACTGGAATTCTTGGTATGCCT
GGGATGACAGCTTGAGCTGGTTTTTATGAAATTTGTGCTCCAAAGAAAGG
CGAATACATCTATGTTTCTGCAACATCTGGTGCAGTTGGTCAGATTGTTG
GGCAATTTGCAAAGATGATGGGTAGCTATGTTGTTGGAAGTGCTGGCAGT
AGAATAAAGGTTGAACTACTCAAGAAACAGCTTGGATTTGATGATGCTTT
CAATT
back to top