FC930252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN3_HUMAN (H(+)/Cl(-) exchange transporter 3 OS=Homo sapiens GN=CLCN3 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13 Identity = 63/204 (30.88%), Postives = 92/204 (45.10%), Query Frame = 3 Query: 111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-----TAPLQ-LFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHL 647 ++V ++GI P+GLF+P++ GA GR VG+ V + +H GLYA++GAA+ LGG RMTVSL V SK V DAF IY+ ++ G+P+L+ E + DV+ PL L ++ +++ T +NGFPVI E+ L G LR L Sbjct: 513 MTVFTFGIKVPSGLFIPSMAIGAIAGRIVGIAVEQLAYYHHDWFIFKEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAK-EEFTHTTLAADVMRPRRNDPPLAVLTQDNMTVDDIENMINETSYNGFPVIMS---KESQRLVGFALRRDL 712
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CICH_TORCA (Chloride channel protein OS=Torpedo californica PE=1 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13 Identity = 62/209 (29.67%), Postives = 94/209 (44.98%), Query Frame = 3 Query: 81 MLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVG--------SHSNLNH---GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLE--THVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK 668 M ++FV F ++ L+ + P G FVP GA GRFVG L+ S+ NL H G YAV+GAA+ + G++ VS V + VA ++YD I++ K PYL + + VGD++ + G+++HVLR T+ FP +D ET L G I R + LL+++ Sbjct: 394 MALYFVMHFWMAALAVTMPVPCGAFVPVFNLGAVLGRFVGELMALLFPDGLVSNGNLYHILPGEYAVIGAAA-MTGAVTHAVSTAVICFELTGQISHVLPMMVAVILANMVAQGLQPSLYDSIIQIKKLPYLPELSWSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD---TPETNTLLGSIERTEVEGLLQRR 598
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CICH_TORMA (Chloride channel protein OS=Torpedo marmorata PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13 Identity = 61/209 (29.19%), Postives = 94/209 (44.98%), Query Frame = 3 Query: 81 MLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVG--------SHSNLNH---GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLE--THVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK 668 M ++FV F ++ L+ + P G FVP GA GRFVG L+ S+ NL H G YAV+GAA+ + G++ VS V + VA ++YD I++ K PYL + + VGD++ + G+++HVLR T+ FP +D +T L G I R + LL+++ Sbjct: 394 MALYFVMHFWMAALAVTMPVPCGAFVPVFNLGAVLGRFVGELMALLFPDGLVSNGNLYHILPGEYAVIGAAA-MTGAVTHAVSTAVICFELTGQISHVLPMMVAVILANMVAQGLQPSLYDSIIQIKKLPYLPELSWSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD---TPDTNTLLGSIDRTEVEGLLQRR 598
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCNX_USTMA (Probable chloride channel protein UM03490-D OS=Ustilago maydis GN=UM03490-D PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13 Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = 3 Query: 75 SSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSN-----------------LNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFN-GNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-TAPLQLFHGIEKAGNVVHVLRTTRHNGFPVI 587 +S+L+ V +L ++SYG PAG+FVP++ GA++GR VG+LV + N + G YA LGAA+ L G R+TV++ V +K VAD F+ G I + ++K G+P+L+ + + + V DV+ P LF K + L + GFP++ Sbjct: 579 NSLLLATVLRTALVIVSYGCKVPAGIFVPSMAIGATFGRMVGILVKALYNAFPHWSLFSACQPDVPCITPGTYAFLGAAAALAGVTRITVAVVVIMFELTGALTYILPTMIVVGITKGVADWFSRGGIAEQMIKFSGYPFLDK--DDHNFGIPVADVMRVCPQVLFASGMKLSELEGKLADGSYKGFPLV 766
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN4_RAT (H(+)/Cl(-) exchange transporter 4 OS=Rattus norvegicus GN=Clcn4 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13 Identity = 68/224 (30.36%), Postives = 102/224 (45.54%), Query Frame = 3 Query: 66 FQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-----TAPLQ-LFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 662 +Q + LIF + +++ ++G+ P+GLF+P++ GA GR VG+ V + +H GLYA++GAA+ LGG RMTVSL V SK VADAF IY+ + G+P+L+ E R L DV+ PL L +V +++ T +NGFPV+ ++ L G R LI +K Sbjct: 430 WQLALALIFKIV---ITIFTFGMKIPSGLFIPSMAVGAMAGRMVGIGVEQLAYHHHDWIIFRNWCRPGADCVTPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAVTSKWVADAFGKEGIYEAHIHLNGYPFLDVKDEFTHRTLAT-DVMRPRRGEPPLSVLTQDSMTVEDVETLIKETDYNGFPVVVSR---DSERLIGFAQRRELILAIK 646
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_RAT (H(+)/Cl(-) exchange transporter 5 OS=Rattus norvegicus GN=Clcn5 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12 Identity = 61/205 (29.76%), Postives = 94/205 (45.85%), Query Frame = 3 Query: 111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650 +++ ++G+ P+GLF+P++ GA GR +G+ + + +H GLYA++GAA+ LGG RMTVSL V SK VADA IYD ++ G+P+LE E + + DV+ PL L +V ++ T ++GFPV+ E+ L G +LR LI Sbjct: 441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHHDWGIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_RABIT (H(+)/Cl(-) exchange transporter 5 OS=Oryctolagus cuniculus GN=CLCN5 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12 Identity = 61/205 (29.76%), Postives = 94/205 (45.85%), Query Frame = 3 Query: 111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650 +++ ++G+ P+GLF+P++ GA GR +G+ + + +H GLYA++GAA+ LGG RMTVSL V SK VADA IYD ++ G+P+LE E + + DV+ PL L +V ++ T ++GFPV+ E+ L G +LR LI Sbjct: 441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHHDWTIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_MOUSE (H(+)/Cl(-) exchange transporter 5 OS=Mus musculus GN=Clcn5 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12 Identity = 61/205 (29.76%), Postives = 94/205 (45.85%), Query Frame = 3 Query: 111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650 +++ ++G+ P+GLF+P++ GA GR +G+ + + +H GLYA++GAA+ LGG RMTVSL V SK VADA IYD ++ G+P+LE E + + DV+ PL L +V ++ T ++GFPV+ E+ L G +LR LI Sbjct: 441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHHDWGIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN4_MOUSE (H(+)/Cl(-) exchange transporter 4 OS=Mus musculus GN=Clcn4 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12 Identity = 64/209 (30.62%), Postives = 95/209 (45.45%), Query Frame = 3 Query: 111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-----TAPLQ-LFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 662 +++ ++G+ P+GLF+P++ GA GR VG+ V + +H GLYA++GAA+ LGG RMTVSL V SK VADAF IY+ + G+P+L+ E R L DV+ PL L +V +++ T +NGFPV+ ++ L G R LI +K Sbjct: 442 ITIFTFGMKIPSGLFIPSMAVGAMAGRMVGIGVEQLAYHHHDWIIFRNWCRPGADCVTPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAVTSKWVADAFGKEGIYEAHIHLNGYPFLDVKDEFTHRTLAT-DVMRPRREEPPLSVLTQDSMTVEDVETLIKETDYNGFPVLVSR---DSERLIGFAQRRELILAIK 646
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN4_HUMAN (H(+)/Cl(-) exchange transporter 4 OS=Homo sapiens GN=CLCN4 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12 Identity = 68/224 (30.36%), Postives = 102/224 (45.54%), Query Frame = 3 Query: 66 FQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-----TAPLQ-LFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 662 +Q + LIF + +++ ++G+ P+GLF+P++ GA GR VG+ V + +H GLYA++GAA+ LGG RMTVSL V SK VADAF IY+ + G+P+L+ E R L DV+ PL L +V +++ T +NGFPV+ ++ L G R LI +K Sbjct: 443 WQLALALIFKIV---VTIFTFGMKIPSGLFIPSMAVGAIAGRMVGIGVEQLAYHHHDWIIFRNWCRPGADCVTPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAVTSKWVADAFGKEGIYEAHIHLNGYPFLDVKDEFTHRTLAT-DVMRPRRGEPPLSVLTQDSMTVEDVETLIKETDYNGFPVVVSR---DSERLIGFAQRRELILAIK 659 The following BLAST results are available for this feature:
BLAST of FC930252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930252 ID=FC930252; Name=FC930252; organism=Citrus clementina; type=EST; length=740bpback to top |