FC930252

Overview
NameFC930252
Unique NameFC930252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN3_HUMAN (H(+)/Cl(-) exchange transporter 3 OS=Homo sapiens GN=CLCN3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 63/204 (30.88%), Postives = 92/204 (45.10%), Query Frame = 3
Query:  111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-----TAPLQ-LFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHL 647
            ++V ++GI  P+GLF+P++  GA  GR VG+ V   +  +H                  GLYA++GAA+ LGG  RMTVSL V                     SK V DAF    IY+  ++  G+P+L+   E +       DV+       PL  L        ++ +++  T +NGFPVI      E+  L G  LR  L
Sbjct:  513 MTVFTFGIKVPSGLFIPSMAIGAIAGRIVGIAVEQLAYYHHDWFIFKEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAK-EEFTHTTLAADVMRPRRNDPPLAVLTQDNMTVDDIENMINETSYNGFPVIMS---KESQRLVGFALRRDL 712          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CICH_TORCA (Chloride channel protein OS=Torpedo californica PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 62/209 (29.67%), Postives = 94/209 (44.98%), Query Frame = 3
Query:   81 MLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVG--------SHSNLNH---GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLE--THVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK 668
            M ++FV  F ++ L+  +  P G FVP    GA  GRFVG L+         S+ NL H   G YAV+GAA+ + G++   VS  V                     +  VA     ++YD I++ K  PYL   +        + VGD++   +         G+++HVLR T+   FP +D     ET  L G I R  +  LL+++
Sbjct:  394 MALYFVMHFWMAALAVTMPVPCGAFVPVFNLGAVLGRFVGELMALLFPDGLVSNGNLYHILPGEYAVIGAAA-MTGAVTHAVSTAVICFELTGQISHVLPMMVAVILANMVAQGLQPSLYDSIIQIKKLPYLPELSWSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD---TPETNTLLGSIERTEVEGLLQRR 598          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CICH_TORMA (Chloride channel protein OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 61/209 (29.19%), Postives = 94/209 (44.98%), Query Frame = 3
Query:   81 MLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVG--------SHSNLNH---GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLE--THVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK 668
            M ++FV  F ++ L+  +  P G FVP    GA  GRFVG L+         S+ NL H   G YAV+GAA+ + G++   VS  V                     +  VA     ++YD I++ K  PYL   +        + VGD++   +         G+++HVLR T+   FP +D     +T  L G I R  +  LL+++
Sbjct:  394 MALYFVMHFWMAALAVTMPVPCGAFVPVFNLGAVLGRFVGELMALLFPDGLVSNGNLYHILPGEYAVIGAAA-MTGAVTHAVSTAVICFELTGQISHVLPMMVAVILANMVAQGLQPSLYDSIIQIKKLPYLPELSWSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD---TPDTNTLLGSIDRTEVEGLLQRR 598          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCNX_USTMA (Probable chloride channel protein UM03490-D OS=Ustilago maydis GN=UM03490-D PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = 3
Query:   75 SSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSN-----------------LNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFN-GNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-TAPLQLFHGIEKAGNVVHVLRTTRHNGFPVI 587
            +S+L+  V   +L ++SYG   PAG+FVP++  GA++GR VG+LV +  N                 +  G YA LGAA+ L G  R+TV++ V                     +K VAD F+ G I + ++K  G+P+L+   + +   + V DV+   P  LF    K   +   L    + GFP++
Sbjct:  579 NSLLLATVLRTALVIVSYGCKVPAGIFVPSMAIGATFGRMVGILVKALYNAFPHWSLFSACQPDVPCITPGTYAFLGAAAALAGVTRITVAVVVIMFELTGALTYILPTMIVVGITKGVADWFSRGGIAEQMIKFSGYPFLDK--DDHNFGIPVADVMRVCPQVLFASGMKLSELEGKLADGSYKGFPLV 766          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN4_RAT (H(+)/Cl(-) exchange transporter 4 OS=Rattus norvegicus GN=Clcn4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 68/224 (30.36%), Postives = 102/224 (45.54%), Query Frame = 3
Query:   66 FQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-----TAPLQ-LFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 662
            +Q +  LIF +    +++ ++G+  P+GLF+P++  GA  GR VG+ V   +  +H                  GLYA++GAA+ LGG  RMTVSL V                     SK VADAF    IY+  +   G+P+L+   E   R L   DV+       PL  L        +V  +++ T +NGFPV+      ++  L G   R  LI  +K
Sbjct:  430 WQLALALIFKIV---ITIFTFGMKIPSGLFIPSMAVGAMAGRMVGIGVEQLAYHHHDWIIFRNWCRPGADCVTPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAVTSKWVADAFGKEGIYEAHIHLNGYPFLDVKDEFTHRTLAT-DVMRPRRGEPPLSVLTQDSMTVEDVETLIKETDYNGFPVVVSR---DSERLIGFAQRRELILAIK 646          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_RAT (H(+)/Cl(-) exchange transporter 5 OS=Rattus norvegicus GN=Clcn5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 61/205 (29.76%), Postives = 94/205 (45.85%), Query Frame = 3
Query:  111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650
            +++ ++G+  P+GLF+P++  GA  GR +G+ +   +  +H                  GLYA++GAA+ LGG  RMTVSL V                     SK VADA     IYD  ++  G+P+LE   E +  +    DV+      PL   L        +V  ++  T ++GFPV+      E+  L G +LR  LI
Sbjct:  441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHHDWGIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_RABIT (H(+)/Cl(-) exchange transporter 5 OS=Oryctolagus cuniculus GN=CLCN5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 61/205 (29.76%), Postives = 94/205 (45.85%), Query Frame = 3
Query:  111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650
            +++ ++G+  P+GLF+P++  GA  GR +G+ +   +  +H                  GLYA++GAA+ LGG  RMTVSL V                     SK VADA     IYD  ++  G+P+LE   E +  +    DV+      PL   L        +V  ++  T ++GFPV+      E+  L G +LR  LI
Sbjct:  441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHHDWTIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_MOUSE (H(+)/Cl(-) exchange transporter 5 OS=Mus musculus GN=Clcn5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 61/205 (29.76%), Postives = 94/205 (45.85%), Query Frame = 3
Query:  111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650
            +++ ++G+  P+GLF+P++  GA  GR +G+ +   +  +H                  GLYA++GAA+ LGG  RMTVSL V                     SK VADA     IYD  ++  G+P+LE   E +  +    DV+      PL   L        +V  ++  T ++GFPV+      E+  L G +LR  LI
Sbjct:  441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHHDWGIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN4_MOUSE (H(+)/Cl(-) exchange transporter 4 OS=Mus musculus GN=Clcn4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 64/209 (30.62%), Postives = 95/209 (45.45%), Query Frame = 3
Query:  111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-----TAPLQ-LFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 662
            +++ ++G+  P+GLF+P++  GA  GR VG+ V   +  +H                  GLYA++GAA+ LGG  RMTVSL V                     SK VADAF    IY+  +   G+P+L+   E   R L   DV+       PL  L        +V  +++ T +NGFPV+      ++  L G   R  LI  +K
Sbjct:  442 ITIFTFGMKIPSGLFIPSMAVGAMAGRMVGIGVEQLAYHHHDWIIFRNWCRPGADCVTPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAVTSKWVADAFGKEGIYEAHIHLNGYPFLDVKDEFTHRTLAT-DVMRPRREEPPLSVLTQDSMTVEDVETLIKETDYNGFPVLVSR---DSERLIGFAQRRELILAIK 646          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN4_HUMAN (H(+)/Cl(-) exchange transporter 4 OS=Homo sapiens GN=CLCN4 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 68/224 (30.36%), Postives = 102/224 (45.54%), Query Frame = 3
Query:   66 FQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV-----TAPLQ-LFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 662
            +Q +  LIF +    +++ ++G+  P+GLF+P++  GA  GR VG+ V   +  +H                  GLYA++GAA+ LGG  RMTVSL V                     SK VADAF    IY+  +   G+P+L+   E   R L   DV+       PL  L        +V  +++ T +NGFPV+      ++  L G   R  LI  +K
Sbjct:  443 WQLALALIFKIV---VTIFTFGMKIPSGLFIPSMAVGAIAGRMVGIGVEQLAYHHHDWIIFRNWCRPGADCVTPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAVTSKWVADAFGKEGIYEAHIHLNGYPFLDVKDEFTHRTLAT-DVMRPRRGEPPLSVLTQDSMTVEDVETLIKETDYNGFPVVVSR---DSERLIGFAQRRELILAIK 659          
The following BLAST results are available for this feature:
BLAST of FC930252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CLCN3_HUMAN1.168e-1330.88H(+)/Cl(-) exchange transporter 3 OS=Homo sapiens ... [more]
CICH_TORCA1.168e-1329.67Chloride channel protein OS=Torpedo californica PE... [more]
CICH_TORMA3.397e-1329.19Chloride channel protein OS=Torpedo marmorata PE=1... [more]
CLCNX_USTMA7.569e-1330.00Probable chloride channel protein UM03490-D OS=Ust... [more]
CLCN4_RAT7.569e-1330.36H(+)/Cl(-) exchange transporter 4 OS=Rattus norveg... [more]
CLCN5_RAT1.291e-1229.76H(+)/Cl(-) exchange transporter 5 OS=Rattus norveg... [more]
CLCN5_RABIT1.291e-1229.76H(+)/Cl(-) exchange transporter 5 OS=Oryctolagus c... [more]
CLCN5_MOUSE1.291e-1229.76H(+)/Cl(-) exchange transporter 5 OS=Mus musculus ... [more]
CLCN4_MOUSE1.291e-1230.62H(+)/Cl(-) exchange transporter 4 OS=Mus musculus ... [more]
CLCN4_HUMAN1.291e-1230.36H(+)/Cl(-) exchange transporter 4 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34005D08EF PostHarvC1 Citrus clementina cDNA clone C34005D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930252 ID=FC930252; Name=FC930252; organism=Citrus clementina; type=EST; length=740bp
AGCCTAATATTCATACAAATGATGATGCTATCAGAAACCTTTTCAGCAAG
GACACTGATAAGGAGTTTCAGCATTCATCAATGCTCATATTTTTTGTCAC
ATGCTTTTCTCTTAGTGTTTTAAGCTATGGGATTGTTGCTCCTGCCGGTC
TTTTTGTTCCTGCTATTGTTACGGGAGCATCCTATGGACGGTTTGTTGGA
ATGTTAGTTGGTTCACACTCAAATCTTAATCATGGCCTTTATGCTGTGCT
GGGTGCTGCTTCATTTCTTGGTGGATCCATGAGGATGACAGTTTCTCTAT
GTGTTAATATCCTAGAACTAACTAATAATCTACTATTGCTGCCTATGATA
ATGCTGGTTCTTCTCATTTCCAAGACTGTAGCAGATGCTTTCAATGGCAA
TATATATGACCTGATAATGAAGGCAAAGGGATTTCCTTATCTGGAAACTC
ATGTTGAGCCTTACATGAGACAGCTGACGGTTGGTGATGTAGTTACAGCC
CCTCTTCAGCTGTTTCATGGAATTGAGAAGGCTGGTAATGTAGTTCATGT
TCTCAGAACTACAAGGCATAACGGATTTCCTGTAATTGACGAGAATCCAC
TTTCCGAGACCCCAATTCTCTATGGTTTAATCCTTCGAGCCCACCTCATT
ACACTGTTAAAGAAGAAAGCTTTCTTGCCCACTCCAAAATCCAACTGTCA
TGATGCTTTCAGTCAGTTCTCAGCAGTGGATTTTGCAAAA
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