FC930252

Overview
NameFC930252
Unique NameFC930252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_PIG (H(+)/Cl(-) exchange transporter 5 OS=Sus scrofa GN=CLCN5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 59/205 (28.78%), Postives = 93/205 (45.37%), Query Frame = 3
Query:  111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV------TAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650
            +++ ++G+  P+GLF+P++  GA  GR +G+ +   +  +H                  GLYA++GAA+ LGG  RMTVSL V                     SK VADA     IYD  ++  G+P+LE   E +  +    DV+       +   L        +V  ++  T ++GFPV+      E+  L G +LR  LI
Sbjct:  441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHHDWAIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPSLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_CAVPO (H(+)/Cl(-) exchange transporter 5 OS=Cavia porcellus GN=CLCN5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 62/205 (30.24%), Postives = 94/205 (45.85%), Query Frame = 3
Query:  111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGM----LVGSHSN--------------LNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650
            +++ ++G+  P+GLF+P++  GA  GR +G+    L   H +              +  GLYA++GAA+ LGG  RMTVSL V                     SK VADA     IYD  ++  G+P+LE   E +  +    DV+      PL   L        +V  ++  T ++GFPV+      E+  L G +LR  LI
Sbjct:  441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYHHRDWTIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_PONAB (H(+)/Cl(-) exchange transporter 5 OS=Pongo abelii GN=CLCN5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 62/205 (30.24%), Postives = 93/205 (45.37%), Query Frame = 3
Query:  111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGM----LVGSHSN--------------LNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650
            +++ ++G+  P+GLF+P++  GA  GR +G+    L   H                +  GLYA++GAA+ LGG  RMTVSL V                     SK VADA     IYD  ++  G+P+LE   E +  +    DV+      PL   L        +V  ++  T ++GFPV+      E+  L G +LR  LI
Sbjct:  441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHQEWTVFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_HUMAN (H(+)/Cl(-) exchange transporter 5 OS=Homo sapiens GN=CLCN5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 62/205 (30.24%), Postives = 93/205 (45.37%), Query Frame = 3
Query:  111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGM----LVGSHSN--------------LNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650
            +++ ++G+  P+GLF+P++  GA  GR +G+    L   H                +  GLYA++GAA+ LGG  RMTVSL V                     SK VADA     IYD  ++  G+P+LE   E +  +    DV+      PL   L        +V  ++  T ++GFPV+      E+  L G +LR  LI
Sbjct:  441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHQEWTVFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641          
The following BLAST results are available for this feature:
BLAST of FC930252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CLCN5_PIG2.202e-1228.78H(+)/Cl(-) exchange transporter 5 OS=Sus scrofa GN... [more]
CLCN5_CAVPO2.202e-1230.24H(+)/Cl(-) exchange transporter 5 OS=Cavia porcell... [more]
CLCN5_PONAB2.876e-1230.24H(+)/Cl(-) exchange transporter 5 OS=Pongo abelii ... [more]
CLCN5_HUMAN2.876e-1230.24H(+)/Cl(-) exchange transporter 5 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34005D08EF PostHarvC1 Citrus clementina cDNA clone C34005D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930252 ID=FC930252; Name=FC930252; organism=Citrus clementina; type=EST; length=740bp
AGCCTAATATTCATACAAATGATGATGCTATCAGAAACCTTTTCAGCAAG
GACACTGATAAGGAGTTTCAGCATTCATCAATGCTCATATTTTTTGTCAC
ATGCTTTTCTCTTAGTGTTTTAAGCTATGGGATTGTTGCTCCTGCCGGTC
TTTTTGTTCCTGCTATTGTTACGGGAGCATCCTATGGACGGTTTGTTGGA
ATGTTAGTTGGTTCACACTCAAATCTTAATCATGGCCTTTATGCTGTGCT
GGGTGCTGCTTCATTTCTTGGTGGATCCATGAGGATGACAGTTTCTCTAT
GTGTTAATATCCTAGAACTAACTAATAATCTACTATTGCTGCCTATGATA
ATGCTGGTTCTTCTCATTTCCAAGACTGTAGCAGATGCTTTCAATGGCAA
TATATATGACCTGATAATGAAGGCAAAGGGATTTCCTTATCTGGAAACTC
ATGTTGAGCCTTACATGAGACAGCTGACGGTTGGTGATGTAGTTACAGCC
CCTCTTCAGCTGTTTCATGGAATTGAGAAGGCTGGTAATGTAGTTCATGT
TCTCAGAACTACAAGGCATAACGGATTTCCTGTAATTGACGAGAATCCAC
TTTCCGAGACCCCAATTCTCTATGGTTTAATCCTTCGAGCCCACCTCATT
ACACTGTTAAAGAAGAAAGCTTTCTTGCCCACTCCAAAATCCAACTGTCA
TGATGCTTTCAGTCAGTTCTCAGCAGTGGATTTTGCAAAA
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