FC930252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_PIG (H(+)/Cl(-) exchange transporter 5 OS=Sus scrofa GN=CLCN5 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12 Identity = 59/205 (28.78%), Postives = 93/205 (45.37%), Query Frame = 3 Query: 111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH------------------GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV------TAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650 +++ ++G+ P+GLF+P++ GA GR +G+ + + +H GLYA++GAA+ LGG RMTVSL V SK VADA IYD ++ G+P+LE E + + DV+ + L +V ++ T ++GFPV+ E+ L G +LR LI Sbjct: 441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHHDWAIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPSLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_CAVPO (H(+)/Cl(-) exchange transporter 5 OS=Cavia porcellus GN=CLCN5 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12 Identity = 62/205 (30.24%), Postives = 94/205 (45.85%), Query Frame = 3 Query: 111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGM----LVGSHSN--------------LNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650 +++ ++G+ P+GLF+P++ GA GR +G+ L H + + GLYA++GAA+ LGG RMTVSL V SK VADA IYD ++ G+P+LE E + + DV+ PL L +V ++ T ++GFPV+ E+ L G +LR LI Sbjct: 441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYHHRDWTIFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_PONAB (H(+)/Cl(-) exchange transporter 5 OS=Pongo abelii GN=CLCN5 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12 Identity = 62/205 (30.24%), Postives = 93/205 (45.37%), Query Frame = 3 Query: 111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGM----LVGSHSN--------------LNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650 +++ ++G+ P+GLF+P++ GA GR +G+ L H + GLYA++GAA+ LGG RMTVSL V SK VADA IYD ++ G+P+LE E + + DV+ PL L +V ++ T ++GFPV+ E+ L G +LR LI Sbjct: 441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHQEWTVFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN5_HUMAN (H(+)/Cl(-) exchange transporter 5 OS=Homo sapiens GN=CLCN5 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12 Identity = 62/205 (30.24%), Postives = 93/205 (45.37%), Query Frame = 3 Query: 111 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGM----LVGSHSN--------------LNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVV----TAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 650 +++ ++G+ P+GLF+P++ GA GR +G+ L H + GLYA++GAA+ LGG RMTVSL V SK VADA IYD ++ G+P+LE E + + DV+ PL L +V ++ T ++GFPV+ E+ L G +LR LI Sbjct: 441 ITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHQEWTVFNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAK-EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLI 641 The following BLAST results are available for this feature:
BLAST of FC930252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930252 ID=FC930252; Name=FC930252; organism=Citrus clementina; type=EST; length=740bpback to top |