FC930253

Overview
NameFC930253
Unique NameFC930253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 46/168 (27.38%), Postives = 87/168 (51.79%), Query Frame = 2
Query:  191 PLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYXEGL---YEVRTTLYPP 685
            P++DM+ L++ + + A L +++ AC++WG F+L+NHG + E L  ++K  ++ +   +E++ +       LE      V SE   LDW    FLR LP     +   P+    +R+T++ ++ E+ K+A  L+  +   L LE   +  A+       +  + + YPP
Sbjct:    5 PVVDMD-LINGEERAATLEKINDACENWGFFELVNHGISTELLDTVEKMNKDHYKKTMEQRFKEMVAAKGLEA-----VQSEIHYLDWESTFFLRHLPSS--NISEIPDLEEDYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPP 164          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 44/168 (26.19%), Postives = 87/168 (51.79%), Query Frame = 2
Query:  191 PLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYXEGL---YEVRTTLYPP 685
            P++D++ LV+ + + A L +++ AC++WG F+L+NHG + E L  ++K  ++ +   +E++ +       +   G   V SE   LDW    FLR LP     +   P+   ++R+T++ ++ E+ K+A  L+  +   L LE   +   +       +  + + YPP
Sbjct:    5 PVVDLS-LVNGEERAATLEKINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTMEQRFK-----EMVAAKGLDDVQSEIHDLDWESTFFLRHLPSS--NISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPP 164          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 43/153 (28.10%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  176 SSDRVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLP-HEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEI 631
            + + +PLID++    PD+ +    ++  AC+ WG FQ+ NHG     L++++      F LP++ K +  +    + GYG A + S   K  W++   +   P ++ RK  LWP+H   + + +E Y E M+K+A+ L+     +L +  ++I
Sbjct:   53 TGENIPLIDLDH---PDATN----QIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQMWSEGFTITGSPLNDFRK--LWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDI 196          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 43/168 (25.60%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  191 PLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYXEG---LYEVRTTLYPP 685
            P+IDM KL + + +   + ++  AC++WG F+L+NHG + E +  +++  +E ++  +E++ +       LE      V SE   LDW    FLR LP  +  +   P+     R+ ++ ++E++ K+A  L+  +   + LE   +  A+       +  + + YPP
Sbjct:    5 PVIDMEKL-NGEERAPTMEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVATKGLEA-----VQSEINDLDWESTFFLRHLP--VSNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPP 164          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 49/183 (26.78%), Postives = 82/183 (44.81%), Query Frame = 2
Query:  188 VPLIDMNKLVDPDSQ-DAELRRL-HSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKL------DLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYXEGLYEVRTTLYPPLSEX*AVIG 712
            VPLID+  ++  D +  AE+ RL   AC+  G FQ++NHG   E L +  +    FF +PL EK+R  ++PG   GY  +F      KL W + +  R+ P +   +       L  +H  +  E    Y  EM +++  ++  +  +L +        +      +R   YPP       +G
Sbjct:   39 VPLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDH-RRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLG 220          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 43/171 (25.15%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  182 DRVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYXEGL---YEVRTTLYPP 685
            +  P+I++ KL +   +DA +  +  AC++WG F+L+NHG   E +  ++K  +  +   +E++ +       LE      V +E   LDW    FLR LP  +  +   P+   ++RE +  +++ + K+A  L+  +   L LE   +  A+       +  + + YPP
Sbjct:    2 ENFPIINLEKL-NGSERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVASKGLEA-----VQAEVTDLDWESTFFLRHLP--VSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPP 164          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 44/151 (29.14%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  179 SDRVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEI 631
            S  +PL+D++K   PD++   ++    AC+ +G F++INHG   +++  ++ +A +FF LP  EK++ G  P +  GYG    I     + W + + L T  ++     L+ E   KFR  L+ Y   MR +A  ++  MA  L+++ + +
Sbjct:   24 SSSIPLVDLSK---PDAKTLIVK----ACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKEKAG--PANPFGYGNK-RIGLNGDIGWIEYLLLTT--NQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNV 162          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 36/145 (24.83%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  185 RVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELE 619
            + P++D++KL+  + +D  +  ++ AC++WG F+++NHG   + + N +K  +E + + +E+K     K   LE   +     E + +DW    +LR LP     L   P+   ++R  ++ + + +  +A  L+  +   L LE
Sbjct:    6 KFPVVDLSKLIG-EERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQKFNDMLKSKGLENLER-----EVEDVDWESTFYLRHLPQS--NLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLE 142          
The following BLAST results are available for this feature:
BLAST of FC930253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
ACCO2_MALDO5.400e-1327.381-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO1_MALDO1.571e-1226.191-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
G3OX1_ARATH3.500e-1228.10Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCO_ACTDE1.737e-1125.601-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
GAO1B_WHEAT5.054e-1126.78Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
ACCO3_PETHY5.054e-1125.151-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
G2OX1_PEA8.621e-1129.14Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
ACCO1_BRAJU8.621e-1124.831-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionC34005D09EF PostHarvC1 Citrus clementina cDNA clone C34005D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930253 ID=FC930253; Name=FC930253; organism=Citrus clementina; type=EST; length=712bp
GGTAATTAATCAATAAACAGAAATGGAAGCTGAAGCAGCAGCGGCAACAC
TCAACCTTGAATGCTGTCTCCCAGTTCCAAGCGTGCAAGAGCTTGCAATC
CAACAGCCCGAAGCGGTGCCGCCTAGGTACATAAGAGATCATGTGGTTGG
TGACCACGTCATCACTGTTAATCCCTCTTCCGATCGTGTACCGTTGATTG
ATATGAACAAGTTAGTCGACCCTGATTCCCAAGATGCAGAGTTACGAAGA
TTACACTCTGCTTGCAAACACTGGGGCCTATTCCAGTTGATAAACCATGG
AGCAGCTGATGAATCGCTGAGGAACATGAAGAAGCAAGCTCAAGAGTTCT
TTGATCTTCCTTTAGAAGAAAAGAAGCGCTGGGGGCAGAAGCCAGGAAGT
CTTGAAGGCTATGGTCAAGCATTTGTCATCTCAGAAGAACAAAAACTTGA
TTGGAATGACATGATCTTCCTCAGAACTCTGCCCCATGAAATCAGGAAGT
TAGATTTATGGCCTGAACACCCCCCAAAATTCAGAGAGACTTTGGAGACT
TATTCTGAAGAGATGAGGAAAGTTGCCACTTCTTTAGTGAGGTCCATGGC
TATGGCACTTGAGCTTGAGGCTCAAGAAATCTCTGATGCTTACCNAGAAG
GACTGTATGAAGTGAGGACGACTTTGTATCCTCCTTTGTCTGAANCCTGA
GCGGTCATTGGG
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