FC930254

Overview
NameFC930254
Unique NameFC930254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.083e-39
Identity = 79/205 (38.54%), Postives = 116/205 (56.59%), Query Frame = 3
Query:   75 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL--FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            ++ K A+ WE  +P  +EE+E+  P+K+EV++++    +C +D +     G  P+  FP + GHE  GIV  VG GV D  PGDHV+  F   C +CP C +   N+CDL       G  + DG  R   +G+ +Y      TFS Y V H   V KI+P+ P +  C++ CG++TG+G+ V  A  + G  VAI GLG VG+AA
Sbjct:    1 MKTKGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHL--VTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDL-GAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAA 202          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.083e-39
Identity = 79/205 (38.54%), Postives = 116/205 (56.59%), Query Frame = 3
Query:   75 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL--FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            ++ K A+ WE  +P  +EE+E+  P+K+EV++++    +C +D +     G  P+  FP + GHE  GIV  VG GV D  PGDHV+  F   C +CP C +   N+CDL       G  + DG  R   +G+ +Y      TFS Y V H   V KI+P+ P +  C++ CG++TG+G+ V  A  + G  VAI GLG VG+AA
Sbjct:    1 MKTKGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHL--VTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDL-GAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAA 202          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.987e-27
Identity = 69/201 (34.33%), Postives = 105/201 (52.24%), Query Frame = 3
Query:   84 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPI-YHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            KAA+  +   P ++E V +  P +++V ++++ T LCHTD+   +     PL P +FGHE  G+VE VG  V  +QPGDHV+  F   C  C  C S +   C         G  +    +    +G  +   F G S+F+ Y +++     K+    PL+ +  L CGI TG G+ +N   P  G ++AIFG GAVGL+A
Sbjct:    4 KAAIVRQKNGPFLLEHVALNEPAEDQVLVRLVATGLCHTDLVCRDQHYPVPL-PMVFGHEGAGVVERVGSAVKKVQPGDHVVLTFY-TCGSCDACLSGDPTSCANSFGPNFMGRSVTGECTIHDHQGAEVGASFFGQSSFATYALSYERNTVKVTKDVPLELLGPLGCGIQTGAGSVLNALNPPAGSAIAIFGAGAVGLSA 202          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 66/197 (33.50%), Postives = 98/197 (49.75%), Query Frame = 3
Query:   84 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVG 674
            +  +A   G P+ + ++ +  P  +EV   I   ++CHTD+ + E  G    FP + GHEA G VESVGEGV  +QPGD+V+  +   C +C  C       C     N  + + + DG          +   +G   F++ T+ H G   K++PAA      +L CG+  G GA VN     +G SVA+ G GAVG
Sbjct:    5 RGVIARSKGAPVELTDIVIPDPGPSEVTALIATCAVCHTDLTYREG-GINDEFPFLLGHEAAGTVESVGEGVDSVQPGDYVVLNWRAVCGQCRACKRGRPQYC-FSTFNATQKMTLTDGTE--------LTPALGIGAFADKTLVHAGQCTKVDPAADPAVAGLLGCGVMAGLGAAVNTGAVSRGDSVAVIGCGAVG 191          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: TERPD_PSESP (Probable alcohol dehydrogenase OS=Pseudomonas sp. GN=terPD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 62/184 (33.70%), Postives = 88/184 (47.83%), Query Frame = 3
Query:  168 LKILFTS---LCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMC------DLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPA---APLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            +K LF S   +CHTD+   +     PL P + GHE  GIVE+VG GV  L+PGD V+  F   C  C  C  E  + C      +      D  V+++ G    S        F G S+FS   +     + KI+     AP++ +  L CG+ TG GA +     + G+S  + G GAVGL+A
Sbjct:    7 MKCLFVSESCVCHTDLAIKDGVLPFPL-PAVLGHEGSGIVEAVGPGVKHLKPGDAVVMTF-ASCGHCASCEHERPSYCLDFGAQNYSAQRADGPVLLSQGDEVIS------GFFFGQSSFSSMAMAREHNLVKIDALVDDAPIELLGPLGCGVQTGAGAVMISLDVRAGRSFLVLGGGAVGLSA 182          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH3_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 66/206 (32.04%), Postives = 96/206 (46.60%), Query Frame = 3
Query:   84 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYF----WEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSC-GISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            KAAV  +  +PL I+EVE       EV ++I    +CHTD++     W  K + PL P   GHE  GIVE VG GVT L+ GD V +P     C  C +C S +  +C+            +   + +S+ G           ++EY       V KI      ++   + C G++T     V  AKP  G+ VAI+G+G +G  A
Sbjct:    2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIP---GHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE------------HQKNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKP--GEWVAIYGIGGLGHVA 180          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH1_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adhT PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 64/206 (31.07%), Postives = 95/206 (46.12%), Query Frame = 3
Query:   84 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYF----WEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSC-GISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            KAAV  +  KPL ++EVE       EV ++I    +CHTD++     W  K + PL P   GHE  G++E VG GVT L+ GD V +P     C  C +C S +  +C+                + +S+ G           ++EY       V KI      ++   + C G++T     V  AKP  G+ VAI+G+G +G  A
Sbjct:    2 KAAVVEQFKKPLQVKEVEKPKISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIP---GHEGVGVIEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE------------RQQNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKP--GEWVAIYGIGGLGHVA 180          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH1_ASPFN (Alcohol dehydrogenase 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=adh1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = 3
Query:   87 AAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVC-VLSCGISTGFGATVNVAKPKKGQSVAIFGLG 665
            A VA + G PL+ +++ V  P  +E+ +K+ ++ +CHTD++    KG  PL    P + GHE  G+V + G+ VT+ + GDH  L    G C  C  C   +  +C             N   S +++ G          TF +Y +      +K+    PLD V  VL  GI+   G   +  +P  GQ+VAI G G
Sbjct:    9 AQVAEQKGGPLIYKQIPVPKPGPDEILVKVRYSGVCHTDLH--ALKGDWPLPVKMPLVGGHEGAGVVVARGDLVTEFEIGDHAGLKWLNGSCLACEFCKQADEPLCP------------NASLSGYTVDG----------TFQQYAIGKATHASKLPKNVPLDAVAPVLCAGITVYKGLKESGVRP--GQTVAIVGAG 180          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH2_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adh PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 66/203 (32.51%), Postives = 99/203 (48.77%), Query Frame = 3
Query:   84 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYF----WEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKI-NPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVG 674
            KAAV  E  K L I+EVE    ++ EV +KI    +CHTD++     W  K + PL P   GHE  GIV  V +GV  ++ GD V +P     C EC +C + +  +C            +N G   +S+ G           ++EY       VAKI +   P++   +L  G++T     V+ A+P  G+ VAI+G+G +G
Sbjct:    2 KAAVVNEFKKALEIKEVERPKLEEGEVLVKIEACGVCHTDLHAAHGDWPIKPKLPLIP---GHEGVGIVVEVAKGVKSIKVGDRVGIPWLYSACGECEYCLTGQETLCP---------HQLNGG---YSVDG----------GYAEYCKAPADYVAKIPDNLDPVEVAPILCAGVTTYKALKVSGARP--GEWVAIYGIGGLG 177          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADHB_BACSU (Uncharacterized zinc-type alcohol dehydrogenase-like protein adhB OS=Bacillus subtilis GN=adhB PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 59/200 (29.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:   90 AVAWEAGKPLVIEEVEVAPPQKNE-VRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMIN-DGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            AV ++  K +V+++V     +K++ + +K+  T++C +D++             + GHE  GIVE VG GVT L+ GD V+  F   C EC  C ++  + CD    N + G      GQ+     G+  Y  V  + F+ + +         +   P +K+ V++  ++TGF +  N A  KKG +V + G G VGL A
Sbjct:    3 AVTYQGIKNVVVKDVPDPKIEKSDDMIIKVTSTAICGSDLHLIHGFIPNMQEDYVIGHEPMGIVEEVGSGVTKLKKGDRVIIPFNIACGECFFCKNQLESQCDQSNDNGEMGAYFGYSGQTGGYPGGQAEYLRVPFANFTHFKIPE-------SCEEPDEKLSVIADAMTTGFWSVDN-AGVKKGDTVIVLGCGPVGLFA 194          
The following BLAST results are available for this feature:
BLAST of FC930254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
ADHB_MYCTU4.083e-3938.54Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO4.083e-3938.54Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
XYLB_PSEPU7.987e-2734.33Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]
FADH_AMYME6.761e-2633.50NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
TERPD_PSESP7.493e-1733.70Probable alcohol dehydrogenase OS=Pseudomonas sp. ... [more]
ADH3_BACST1.669e-1632.04Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH1_BACST1.669e-1631.07Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH1_ASPFN3.719e-1630.30Alcohol dehydrogenase 1 OS=Aspergillus flavus (str... [more]
ADH2_BACST1.846e-1532.51Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADHB_BACSU4.111e-1529.50Uncharacterized zinc-type alcohol dehydrogenase-li... [more]

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Properties
Property NameValue
Genbank descriptionC34005D10EF PostHarvC1 Citrus clementina cDNA clone C34005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930254 ID=FC930254; Name=FC930254; organism=Citrus clementina; type=EST; length=685bp
TAACACTGCTAATTTTACAGGTGTTGAGAGTATCATCATTCATCATCAAT
ATGTCTGGCACAGCTGGTCAAGTTATTCGCTGCAAAGCGGCGGTGGCATG
GGAGGCGGGGAAGCCACTGGTGATTGAAGAAGTGGAGGTGGCTCCACCAC
AGAAAAATGAAGTTCGATTGAAGATCCTCTTCACCTCTTTATGCCATACT
GATGTTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCAT
TTTTGGTCACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTAA
CTGATCTCCAACCAGGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTGC
AAGGAATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCCT
CAGGATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCGAGAT
TCTCGATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTTC
AGTGAATACACTGTTACCCATGTCGGTTGTGTTGCTAAGATCAATCCTGC
TGCCCCTCTTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCCACAGGTT
TTGGGGCTACTGTTAATGTCGCCAAACCGAAGAAGGGCCAGTCTGTTGCC
ATTTTTGGATTGGGTGCAGTTGGCCTCGCTGCTGC
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