FC930254

Overview
NameFC930254
Unique NameFC930254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH_SCHPO (Alcohol dehydrogenase OS=Schizosaccharomyces pombe GN=adh1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 59/199 (29.65%), Postives = 89/199 (44.72%), Query Frame = 3
Query:   87 AAVAWEAGKP--LVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLG 665
            AAV    G P  +  EEV VA P ++EV + I +T +CHTD++    +G  PL    P I GHE  G+V  VG GVT L+ GD V +      C  C +C   E  +C  +++            S +++ G          TF  Y + +      I  + PL+    + C   T + A +  +K   G+ + I G G
Sbjct:    9 AAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLH--ALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHIQL------------SGYTVDG----------TFQHYCIANATHATIIPESVPLEVAAPIMCAGITCYRA-LKESKVGPGEWICIPGAG 182          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: RSPB_ECOLI (Starvation-sensing protein rspB OS=Escherichia coli (strain K12) GN=rspB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 52/192 (27.08%), Postives = 81/192 (42.19%), Query Frame = 3
Query:  102 EAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGL 677
            E    L I E E+  P   EVR+K+    +C +D + +        +PR+ GHE  G++++VGEGV   + G+ V       C  C  C   + N+C  L +    GV  + G                   FSEY V       KI P A  D+  V+    +     T +  +P +  +V ++G G +GL
Sbjct:    7 EKPNQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAV---LGVHADGG-------------------FSEYAVVPAKNAWKI-PEAVADQYAVMIEPFTIAANVTGH-GQPTENDTVLVYGAGPIGL 174          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 47/179 (26.26%), Postives = 77/179 (43.02%), Query Frame = 3
Query:  150 QKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRI---NTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVG 674
            ++++V +K+L+  +CHTD++  + +    ++P + GHE  G+V  VG GVT  + GD V +  F   C+ C  C   + N C  + I    TD G     G                   FS+  V     V ++  + P D    L C   T +   V       G+ + + GLG +G
Sbjct:   31 EEDDVTIKVLYCGICHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQG------------------GFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLG 191          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 56/205 (27.32%), Postives = 88/205 (42.93%), Query Frame = 3
Query:   84 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFG-LGAVGLAA 683
            K  + +E G  L  +++ V  P+ NE+ + + ++ +CHTD++ W  KG  PL    P + GHE  GIV + GE V + + GD+  +    G C  C  C     + C    +  D     +DG                  +F +Y        A+I     L ++  + C   T + A +  A  K GQ VAI G  G +G  A
Sbjct:   35 KGVIFYENGGKLEYKDLPVPKPKANEILINVKYSGVCHTDLHAW--KGDWPLPVKLPLVGGHEGAGIVVAKGENVKNFEIGDYAGIKWLNGSCMSCELCEQGYESNC----LQADLSGYTHDG------------------SFQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKA-LKTADLKPGQWVAISGAAGGLGSLA 214          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH3_KLULA (Alcohol dehydrogenase 3, mitochondrial OS=Kluyveromyces lactis GN=ADH3 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 59/206 (28.64%), Postives = 88/206 (42.72%), Query Frame = 3
Query:   84 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCH-SEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFG-LGAVGLAA 683
            K  + +E G  L  +++ V  P+ NE+ + + ++ +CHTD++ W  KG  PL    P + GHE  G+V ++GE V     GD   +    G C  C +C  S ESN  D      D     +DG                  +F +Y        A+I     L +V  + C   T + A +  A  K G  VAI G  G +G  A
Sbjct:   34 KGVIFYENGGKLEYKDIPVPKPKPNEILINVKYSGVCHTDLHAW--KGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWNIGDFAGIKWLNGSCMSCEYCELSNESNCPD-----ADLSGYTHDG------------------SFQQYATADAVQAARIPKGTDLAEVAPILCAGVTVYKA-LKSANLKAGDWVAISGAAGGLGSLA 213          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: YJJN_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjjN OS=Escherichia coli (strain K12) GN=yjjN PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 53/191 (27.75%), Postives = 79/191 (41.36%), Query Frame = 3
Query:  111 KPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            K LV ++ E+  P  NE  +KI    +C TD++ W        +PR+ GHE  G +  +G+ + DL+ G  V  +    C++CP C S  +N C+ + +    GV  + G                   FSEY       VA I PA  +D                V  A    G+ V + G G +GL A
Sbjct:   13 KELVWKQREIPIPGDNEALIKIKSVGICGTDIHAWGGNQPFFSYPRVLGHEICGEIVGLGKNIADLKNGQQVAVIPYVACQQCPACKSGRTNCCEKISV---IGVHQDGG-------------------FSEYLSVP---VANILPADGIDPQAAALIEPFAISAHAVRRAAIAPGEQVLVVGAGPIGLGA 178          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 51/190 (26.84%), Postives = 79/190 (41.58%), Query Frame = 3
Query:  156 NEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYT---VTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKK----------GQSVAIFGLGAVGLAA 683
            ++V +K+ +  +CHTD++F        ++P + GHE  G+V  VG  V   + GD V +      C +C HC   E N CD + + T  G+                  + G+ T+  Y+   V H   V +I    PLD    L C       A + V  P K          G+ + + GLG +G  A
Sbjct:   36 DDVTIKVKYCGMCHTDLHFIHNDWGITMYPVVPGHEITGVVTKVGTNVAGFKVGDRVGVGCIAASCLDCEHCRRSEENYCDKVAL-TYNGIF-----------------WDGSITYGGYSGMLVAHKRFVVRIPDTLPLDAAAPLLC-------AGITVYSPMKQHGMLQADAAGRRLGVVGLGGLGHVA 200          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH2_CAEEL (Alcohol dehydrogenase 2 OS=Caenorhabditis elegans GN=sodh-2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 50/188 (26.60%), Postives = 79/188 (42.02%), Query Frame = 3
Query:  108 GKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQ-TPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLG 665
            G PL + +V V  PQ+NE+ +KI ++ +CH+D++ WE   +   + P I GHE  G V ++G  V     GD   + +    C  C +C +    +CD ++         N G  R               TF EY         K++    L     + CG  T +  ++     K GQ V + G G
Sbjct:   19 GGPLEVRQVSVPQPQENELLVKIEYSGICHSDLHTWEGDFEYASICPLIGGHEGAGTVVTIGSKVKGWNIGDRAGIKLINANCLNCEYCKTGHEPLCDHIQ---------NYGIDRH-------------GTFQEYLTIRDIDAIKVSNDTNLAAAAPVLCGGVTAY-KSLKATNVKPGQIVVLTGAG 183          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH2_KLULA (Alcohol dehydrogenase 2 OS=Kluyveromyces lactis GN=ADH2 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 59/206 (28.64%), Postives = 88/206 (42.72%), Query Frame = 3
Query:   84 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCH-SEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFG-LGAVGLAA 683
            K  + +E G  L  +++ V  P+ NE+ + + ++ +CHTD++ W  KG  PL    P + GHE  G+V ++GE V     GD   +    G C  C +C  S ESN  D      D     +DG                  +F +Y        A+I     L +V  + C   T + A +  A  K G  VAI G  G +G  A
Sbjct:    8 KGVIFYENGGELQYKDIPVPKPKANELLINVKYSGVCHTDLHAW--KGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWNIGDFAGIKWLNGSCMSCEYCELSNESNCPD-----ADLSGYTHDG------------------SFQQYATADAVQAARIPKGTDLAEVAPILCAGVTVYKA-LKSADLKAGDWVAISGACGGLGSLA 187          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH1_KLULA (Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 56/205 (27.32%), Postives = 86/205 (41.95%), Query Frame = 3
Query:   84 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFG-LGAVGLAA 683
            K  + +E G  L  +++ V  P+ NE+ + + ++ +CHTD++ W  KG  PL    P + GHE  G+V ++GE V   + GD   +    G C  C +C     + C       D     +DG                  +F +Y        AKI     L +V  + C   T + A +  A  K G  VAI G  G +G  A
Sbjct:   10 KGVIFYENGGELQYKDIPVPKPKANELLINVKYSGVCHTDLHAW--KGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWKIGDFAGIKWLNGSCMSCEYCELSNESNCP----EADLSGYTHDG------------------SFQQYATADAVQAAKIPVGTDLAEVAPVLCAGVTVYKA-LKSANLKAGDWVAISGAAGGLGSLA 189          
The following BLAST results are available for this feature:
BLAST of FC930254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
ADH_SCHPO1.462e-1229.65Alcohol dehydrogenase OS=Schizosaccharomyces pombe... [more]
RSPB_ECOLI1.910e-1227.08Starvation-sensing protein rspB OS=Escherichia col... [more]
CAD8A_ORYSJ1.910e-1226.26Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
ADH4_KLULA1.910e-1227.32Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
ADH3_KLULA3.258e-1228.64Alcohol dehydrogenase 3, mitochondrial OS=Kluyvero... [more]
YJJN_ECOLI4.255e-1227.75Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
CADH6_ORYSJ5.557e-1226.84Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
ADH2_CAEEL5.557e-1226.60Alcohol dehydrogenase 2 OS=Caenorhabditis elegans ... [more]
ADH2_KLULA7.257e-1228.64Alcohol dehydrogenase 2 OS=Kluyveromyces lactis GN... [more]
ADH1_KLULA7.257e-1227.32Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN... [more]

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Properties
Property NameValue
Genbank descriptionC34005D10EF PostHarvC1 Citrus clementina cDNA clone C34005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930254 ID=FC930254; Name=FC930254; organism=Citrus clementina; type=EST; length=685bp
TAACACTGCTAATTTTACAGGTGTTGAGAGTATCATCATTCATCATCAAT
ATGTCTGGCACAGCTGGTCAAGTTATTCGCTGCAAAGCGGCGGTGGCATG
GGAGGCGGGGAAGCCACTGGTGATTGAAGAAGTGGAGGTGGCTCCACCAC
AGAAAAATGAAGTTCGATTGAAGATCCTCTTCACCTCTTTATGCCATACT
GATGTTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCAT
TTTTGGTCACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTAA
CTGATCTCCAACCAGGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTGC
AAGGAATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCCT
CAGGATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCGAGAT
TCTCGATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTTC
AGTGAATACACTGTTACCCATGTCGGTTGTGTTGCTAAGATCAATCCTGC
TGCCCCTCTTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCCACAGGTT
TTGGGGCTACTGTTAATGTCGCCAAACCGAAGAAGGGCCAGTCTGTTGCC
ATTTTTGGATTGGGTGCAGTTGGCCTCGCTGCTGC
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