FC930254

Overview
NameFC930254
Unique NameFC930254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7036 contig Ccv1_Contig7036:78..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 45/178 (25.28%), Postives = 72/178 (40.45%), Query Frame = 3
Query:  153 KNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            + +VR K+LF  +CHTD+   + +     +P + GHE  G+V  VG  V     GD V +    G C+ C  C+  + N C  +        ++  G   F          +    +S++ V     + +I    PLD    L C   T +         K G  + + GLG +G  A
Sbjct:   33 EKDVRFKVLFCGICHTDLSMAKNEWGLTTYPLVPGHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKM--------ILTSGAKNFD-------DTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVA 195          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 47/178 (26.40%), Postives = 76/178 (42.70%), Query Frame = 3
Query:  153 KNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            +N+V +KILF  +CHTD++  +       +P + GHE  GI   VG+ VT  + GD V + V +G C+ C  C  +  N C   +++     + +DG   +               +SE  V     V +     P D    L C   T +         + G+ + + GLG +G  A
Sbjct:   37 ENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCP--QMSFTYNAIGSDGTKNY-------------GGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVA 199          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 55/197 (27.92%), Postives = 80/197 (40.61%), Query Frame = 3
Query:   87 AAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVG 674
            A  A  A +PL    +    P  ++V + I F  +CH+D++  +A+   P +P + GHE  G+V +VG  VT  + GD V +  F   C+EC  C       C     N     +  DGQ                  +SE  V     V +I    PLD    L C   T + + +          VAI GLG +G
Sbjct:    6 AYAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCK-PGANFTYNSIGKDGQPT-------------QGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLY-SPLRHWNAGANTRVAIIGLGGLG 187          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 55/197 (27.92%), Postives = 80/197 (40.61%), Query Frame = 3
Query:   87 AAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVG 674
            A  A  A +PL    +    P  ++V + I F  +CH+D++  +A+   P +P + GHE  G+V +VG  VT  + GD V +  F   C+EC  C       C     N     +  DGQ                  +SE  V     V +I    PLD    L C   T + + +          VAI GLG +G
Sbjct:    6 AYAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCK-PGANFTYNSIGKDGQPT-------------QGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLY-SPLRHWNAGANTRVAIIGLGGLG 187          
The following BLAST results are available for this feature:
BLAST of FC930254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
CADH7_ARATH6.144e-1125.28Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CADH9_ARATH8.024e-1126.40Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
ADHC_MYCTU8.024e-1127.92NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO8.024e-1127.92NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionC34005D10EF PostHarvC1 Citrus clementina cDNA clone C34005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930254 ID=FC930254; Name=FC930254; organism=Citrus clementina; type=EST; length=685bp
TAACACTGCTAATTTTACAGGTGTTGAGAGTATCATCATTCATCATCAAT
ATGTCTGGCACAGCTGGTCAAGTTATTCGCTGCAAAGCGGCGGTGGCATG
GGAGGCGGGGAAGCCACTGGTGATTGAAGAAGTGGAGGTGGCTCCACCAC
AGAAAAATGAAGTTCGATTGAAGATCCTCTTCACCTCTTTATGCCATACT
GATGTTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCAT
TTTTGGTCACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTAA
CTGATCTCCAACCAGGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTGC
AAGGAATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCCT
CAGGATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCGAGAT
TCTCGATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTTC
AGTGAATACACTGTTACCCATGTCGGTTGTGTTGCTAAGATCAATCCTGC
TGCCCCTCTTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCCACAGGTT
TTGGGGCTACTGTTAATGTCGCCAAACCGAAGAAGGGCCAGTCTGTTGCC
ATTTTTGGATTGGGTGCAGTTGGCCTCGCTGCTGC
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