FC930254

Overview
NameFC930254
Unique NameFC930254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.801e-56
Identity = 102/202 (50.50%), Postives = 140/202 (69.31%), Query Frame = 3
Query:   75 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLA 680
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.801e-56
Identity = 102/202 (50.50%), Postives = 140/202 (69.31%), Query Frame = 3
Query:   75 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLA 680
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.801e-56
Identity = 102/202 (50.50%), Postives = 140/202 (69.31%), Query Frame = 3
Query:   75 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLA 680
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.801e-56
Identity = 102/202 (50.50%), Postives = 140/202 (69.31%), Query Frame = 3
Query:   75 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLA 680
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.189e-56
Identity = 106/208 (50.96%), Postives = 142/208 (68.27%), Query Frame = 3
Query:   57 GTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLA 680
            GTAG+VI+CKAAV W   +P  IEE+EVAPP+  EVR+KIL T +C TD +  +       FP I GHEA G+VESVGEGVT ++PGD V+P+F  +C+EC  C + E N+C  +R +     ++ DG +RF+ KGKP+ HF+ TSTF+EYTV     VAK++ AAP +K C++ CG STG+GA V  AK   G +  +FGLG VGL+
Sbjct:    2 GTAGKVIKCKAAVLWGVNQPFSIEEIEVAPPKAKEVRVKILATGICRTDDHIIKGS-MVSKFPVIVGHEAVGVVESVGEGVTTVRPGDKVIPLFLPQCRECNACLNPEGNLC--IRSDLTGCGVLADGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKVDGAAPPEKACLIGCGFSTGYGAAVKTAKVTPGSTCVVFGLGGVGLS 206          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 8.189e-56
Identity = 106/207 (51.21%), Postives = 146/207 (70.53%), Query Frame = 3
Query:   60 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLA 680
            TAG+VI+CKAAV WE  KP  IE++EVAPP+ +EVR+K++ T +C +D +       +PL P + GHE  GIVESVGEGVT ++PGD V+P+FT +C +C  C   E N+C    +   RG ++ DG SRF+ +GK I++F+ TSTFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ V VAK   G + A+FGLG VGL+
Sbjct:    3 TAGKVIKCKAAVLWEPHKPFSIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSRSLASPL-PAVLGHEGAGIVESVGEGVTSVKPGDKVIPLFTPQCGKCRICKHPEYNLCMKNDLMQPRGTLL-DGTSRFTCRGKAIHNFISTSTFSQYTVVDEMAVAKIDGASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLS 207          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 8.189e-56
Identity = 109/208 (52.40%), Postives = 143/208 (68.75%), Query Frame = 3
Query:   60 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAA 683
            TAG+VI+C+AAV WE  KP  IEEVEVAPP+  EVR+KI+ T +C +D +       TPL P I GHEAGGIVES+GEGVT ++PGD V+P+F  +C +C  C   ESN+C    +   +G ++ DG SRF+ KGKPI+HF+G +TFSEYTV     V KI+ A+PL+KVC++ CG STG+G+ V V K  +G   A    G VGL+A
Sbjct:    3 TAGKVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCTHGDLGRAQGTLM-DGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDAASPLEKVCLIGCGFSTGYGSAVKVGKVARGSICACVWSGRVGLSA 208          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.397e-55
Identity = 103/202 (50.99%), Postives = 139/202 (68.81%), Query Frame = 3
Query:   75 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLA 680
            ++ +AAVA+  G PL I E++VAPP+K EV +KI  T +CHTD Y         LFP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +GVM  D  SRF + G+P+YH++G STFSEYTV     +AKINP A  ++VC+L CG++TG GA  N AK ++G SVA+FGLG +GLA
Sbjct:    1 MKSRAAVAFGPGLPLEIVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECDFCTSGKTNLCVAVRETQGKGVM-PDATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGGIGLA 201          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.824e-55
Identity = 105/202 (51.98%), Postives = 138/202 (68.32%), Query Frame = 3
Query:   75 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLA 680
            ++ +AAVA+E GKPL I E++VAPPQ+ EV +KI  T +CHTD +         LFP + GHE  GIV  VGEGVT +Q GDHV+P++T EC +C  C S ++N+C  +R    +GVM  DG SRFS  G+ +YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+FGLG +GLA
Sbjct:    1 MKSRAAVAFEVGKPLQIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVIPLYTAECGKCLFCRSGKTNLCVAVRATQGKGVM-PDGTSRFSYNGQSLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGGIGLA 201          
BLAST of FC930254 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.112e-55
Identity = 101/202 (50.00%), Postives = 139/202 (68.81%), Query Frame = 3
Query:   75 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLA 680
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK +   SVA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPDDSVAVFGLGAIGLA 201          
The following BLAST results are available for this feature:
BLAST of FC930254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
FRMA_ECOK14.801e-5650.50S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS4.801e-5650.50S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO574.801e-5650.50S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO244.801e-5650.50S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH7_MOUSE8.189e-5650.96Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH1_PERMA8.189e-5651.21Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH1_GEOAT8.189e-5652.40Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
FRMA_PASPI1.397e-5550.99S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
FRMA_SYNY31.824e-5551.98S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
FRMA_ECOSM3.112e-5550.00S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC34005D10EF PostHarvC1 Citrus clementina cDNA clone C34005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930254 ID=FC930254; Name=FC930254; organism=Citrus clementina; type=EST; length=685bp
TAACACTGCTAATTTTACAGGTGTTGAGAGTATCATCATTCATCATCAAT
ATGTCTGGCACAGCTGGTCAAGTTATTCGCTGCAAAGCGGCGGTGGCATG
GGAGGCGGGGAAGCCACTGGTGATTGAAGAAGTGGAGGTGGCTCCACCAC
AGAAAAATGAAGTTCGATTGAAGATCCTCTTCACCTCTTTATGCCATACT
GATGTTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCAT
TTTTGGTCACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTAA
CTGATCTCCAACCAGGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTGC
AAGGAATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCCT
CAGGATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCGAGAT
TCTCGATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTTC
AGTGAATACACTGTTACCCATGTCGGTTGTGTTGCTAAGATCAATCCTGC
TGCCCCTCTTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCCACAGGTT
TTGGGGCTACTGTTAATGTCGCCAAACCGAAGAAGGGCCAGTCTGTTGCC
ATTTTTGGATTGGGTGCAGTTGGCCTCGCTGCTGC
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