FC930257
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 6.616e-59 Identity = 111/164 (67.68%), Postives = 143/164 (87.20%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638 N+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYANN++R+TI+RYKKAC+DS+N ++ E N QQE+ KLR+QI+ IQN NR+++G++LS+L+ KELK +E RLEK I R+RSKK+E+LL EIE +KREI+L N+N+YLR++++E ER Sbjct: 13 NSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVER 176
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 2.602e-55 Identity = 105/167 (62.87%), Postives = 138/167 (82.63%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANT----QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641 N T+RQVTFCKRRNGLLKKAYEL++LCDAE+ALIVFSSRGRLYE++N NS R+TI+RYKKA A +S + + N+ QQEA K+R QI+ +QN NRH++GE++ + KELK+LE RLEKGI R+RSKK+E+L +EIE+M+KRE LQN+NM+LR++++E ERA Sbjct: 13 NKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERA 179
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2) HSP 1 Score: 213.772 bits (543), Expect = 7.569e-55 Identity = 111/167 (66.47%), Postives = 139/167 (83.23%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGS-ITEANTQQ----EATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638 NTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NN+ V+ATIDRYKKA A S G+ + E N QQ E+ KLR QI+ +QN N+H++G+ +S L+ KELK LE+RLEKGI ++R++KNE+L +EI +M KREI+LQNDNM LR++I+E E+ Sbjct: 13 NTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQ 179
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34 Identity = 74/159 (46.54%), Postives = 108/159 (67.92%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKAC---ADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRI 623 N NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ + + T++RY+ C DS+N S T+ + E +KL+ + +Q RH+LGE L L+ KEL+ LE +LE + + R +K ++++ ++E + ++E QL N L+ ++ Sbjct: 13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQ-SWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKL 170
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34 Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKA--CADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641 N NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ + + +TI+RY + C+ S+N T + QE TKL+ + + NR++LGE L + KEL+ LE +LE + R +K ++++ E+E + K+E QL + N L+ + A Sbjct: 13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHA 176
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 1.389e-32 Identity = 75/160 (46.88%), Postives = 112/160 (70.00%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADS---SNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRIS 626 N+T+RQVTF KRRNG+ KKA EL++LCDAEV L++FSS GRLYEY++ S+++ IDRY K+ + +NP S + Q+EA LR+Q+ +Q +R ++GE LS LN KEL++LE +LE + VR+KK+ +L+ EI + ++ + +NM L +IS Sbjct: 13 NSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSELKF-WQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKIS 171
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.389e-32 Identity = 73/165 (44.24%), Postives = 109/165 (66.06%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATI----DRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638 NT NRQVTF KRR+GLLKKA E+SVLCDAEVALI+FS++G+LY+YA +S I +RY A + S T+ N E KL+ ++ IQ +H++GE L +LN KEL+ LE +LE + +RS+K++++L I ++++E LQ +N L+ + E ++ Sbjct: 13 NTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQK 177
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.814e-32 Identity = 68/160 (42.50%), Postives = 105/160 (65.62%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQ----QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRI 623 N NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ + + T+++Y C ++ S QE ++L+ ++ +Q RH+LGE L L+ KEL+ LE +LE + + R +K ++++ +++ + ++E QL N L++++ Sbjct: 13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 172
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32 Identity = 77/179 (43.02%), Postives = 114/179 (63.69%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERAXXXXXXXXXXXXGGGH 689 N +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E++++S + T++RY+ +S + + QE KL+ ++ +Q R+ILGE L L+ KEL+ LE ++E + ++RS+KN+ LL ++ ++ +E QLQ+ N LR ++ E GGGH Sbjct: 13 NKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETS---AENVLHMSWQDGGGH 188
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32 Identity = 77/179 (43.02%), Postives = 114/179 (63.69%), Query Frame = 3 Query: 156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERAXXXXXXXXXXXXGGGH 689 N +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E++++S + T++RY+ +S + + QE KL+ ++ +Q R+ILGE L L+ KEL+ LE ++E + ++RS+KN+ LL ++ ++ +E QLQ+ N LR ++ E GGGH Sbjct: 13 NKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETS---AENVLHMSWQDGGGH 188 The following BLAST results are available for this feature:
BLAST of FC930257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 118
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930257 ID=FC930257; Name=FC930257; organism=Citrus clementina; type=EST; length=719bpback to top |