FC930257

Overview
NameFC930257
Unique NameFC930257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.616e-59
Identity = 111/164 (67.68%), Postives = 143/164 (87.20%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            N+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYANN++R+TI+RYKKAC+DS+N  ++ E N    QQE+ KLR+QI+ IQN NR+++G++LS+L+ KELK +E RLEK I R+RSKK+E+LL EIE  +KREI+L N+N+YLR++++E ER
Sbjct:   13 NSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVER 176          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.602e-55
Identity = 105/167 (62.87%), Postives = 138/167 (82.63%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANT----QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            N T+RQVTFCKRRNGLLKKAYEL++LCDAE+ALIVFSSRGRLYE++N NS R+TI+RYKKA A +S    + + N+    QQEA K+R QI+ +QN NRH++GE++  +  KELK+LE RLEKGI R+RSKK+E+L +EIE+M+KRE  LQN+NM+LR++++E ERA
Sbjct:   13 NKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERA 179          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 7.569e-55
Identity = 111/167 (66.47%), Postives = 139/167 (83.23%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGS-ITEANTQQ----EATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            NTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NN+ V+ATIDRYKKA A  S  G+ + E N QQ    E+ KLR QI+ +QN N+H++G+ +S L+ KELK LE+RLEKGI ++R++KNE+L +EI +M KREI+LQNDNM LR++I+E E+
Sbjct:   13 NTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQ 179          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 74/159 (46.54%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKAC---ADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRI 623
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  +  T++RY+  C    DS+N  S T+ +   E +KL+ +   +Q   RH+LGE L  L+ KEL+ LE +LE  + + R +K ++++ ++E + ++E QL   N  L+ ++
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQ-SWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKL 170          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKA--CADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  + +TI+RY +   C+ S+N    T  +  QE TKL+ +   +   NR++LGE L  +  KEL+ LE +LE  +   R +K ++++ E+E + K+E QL + N  L+ +      A
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHA 176          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.389e-32
Identity = 75/160 (46.88%), Postives = 112/160 (70.00%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADS---SNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRIS 626
            N+T+RQVTF KRRNG+ KKA EL++LCDAEV L++FSS GRLYEY++ S+++ IDRY K+  +    +NP S  +   Q+EA  LR+Q+  +Q  +R ++GE LS LN KEL++LE +LE  +  VR+KK+ +L+ EI  + ++   +  +NM L  +IS
Sbjct:   13 NSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSELKF-WQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKIS 171          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.389e-32
Identity = 73/165 (44.24%), Postives = 109/165 (66.06%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATI----DRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            NT NRQVTF KRR+GLLKKA E+SVLCDAEVALI+FS++G+LY+YA +S    I    +RY  A     +  S T+ N   E  KL+ ++  IQ   +H++GE L +LN KEL+ LE +LE  +  +RS+K++++L  I  ++++E  LQ +N  L+  + E ++
Sbjct:   13 NTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQK 177          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.814e-32
Identity = 68/160 (42.50%), Postives = 105/160 (65.62%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQ----QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRI 623
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  +  T+++Y   C ++    S           QE ++L+ ++  +Q   RH+LGE L  L+ KEL+ LE +LE  + + R +K ++++ +++ + ++E QL   N  L++++
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 172          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 77/179 (43.02%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERAXXXXXXXXXXXXGGGH 689
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E++++S +  T++RY+    +S +  +       QE  KL+ ++  +Q   R+ILGE L  L+ KEL+ LE ++E  + ++RS+KN+ LL ++  ++ +E QLQ+ N  LR ++ E                GGGH
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETS---AENVLHMSWQDGGGH 188          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 77/179 (43.02%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERAXXXXXXXXXXXXGGGH 689
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E++++S +  T++RY+    +S +  +       QE  KL+ ++  +Q   R+ILGE L  L+ KEL+ LE ++E  + ++RS+KN+ LL ++  ++ +E QLQ+ N  LR ++ E                GGGH
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETS---AENVLHMSWQDGGGH 188          
The following BLAST results are available for this feature:
BLAST of FC930257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AGL11_ARATH6.616e-5967.68Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD21_ORYSJ2.602e-5562.87MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD13_ORYSJ7.569e-5566.47MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MADS6_ORYSJ9.620e-3446.54MADS-box transcription factor 6 OS=Oryza sativa su... [more]
AGL6_ARATH9.620e-3446.34Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MAD27_ORYSJ1.389e-3246.88MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD14_ORYSI1.389e-3244.24MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD17_ORYSJ1.814e-3242.50MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MADS1_ORYSJ2.369e-3243.02MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI2.369e-3243.02MADS-box transcription factor 1 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC34005E01EF PostHarvC1 Citrus clementina cDNA clone C34005E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930257 ID=FC930257; Name=FC930257; organism=Citrus clementina; type=EST; length=719bp
AGATAGATATATTTTTTTCTTCTTTCTTTTTTGTCTTTTTCAGGTGTAGC
TCAAGCAAGTTACCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAG
CTCAAGCCAAAGCAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGA
TCGAGAACACAACAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGA
TTGTTGAAGAAAGCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGC
TCTCATCGTCTTCTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACA
GTGTCAGAGCAACAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCT
AACCCAGGATCTATTACTGAAGCTAACACTCAGCAAGAAGCCACAAAACT
ACGAAGACAAATCCGGGAGATTCAGAATTTGAACAGGCACATTCTGGGTG
AGGCCCTCAGCACTTTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGA
CTTGAGAAGGGAATCGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATT
AGCTGAAATCGAGTTCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATA
ACATGTACCTGAGAAGCAGGATATCTGAAAATGAGAGAGCACAACAAGAA
CGGCAATCAGAAAGCATGATGCAGCAAGGAGGAGGGCATGTGTACGAGCC
CGCGGCTTCACAGCCCTAT
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