FC930257

Overview
NameFC930257
Unique NameFC930257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.836e-31
Identity = 69/158 (43.67%), Postives = 109/158 (68.99%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQQ---EATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSR 620
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVAL++FS R +LYE++++S+ ATI+RY++   +  N     + N+QQ   E + L ++I +++   R +LGE +   + +EL+ LE +L++ + R+R+KK ++L  EIE ++  E  L  +N  L+ +
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK 169          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.622e-31
Identity = 71/165 (43.03%), Postives = 110/165 (66.67%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNP------GSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISE 629
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K    +  P          E ++QQE  KL+ +   +Q   R++LGE L  L+ KEL++LE +L+  + ++R+ + + +L ++  ++ +E  L   N  LR R+++
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLAD 177          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.622e-31
Identity = 78/165 (47.27%), Postives = 105/165 (63.64%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITE--ANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RGRLYE+A+  S++ TIDRYK    D  N  +I +     + +   L +++  +    R ILGE L   + +EL+ LE +LEK +  +R KK E+L  +I  ++++E  L  DN  LR +    E A
Sbjct:   13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAA 177          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 73/165 (44.24%), Postives = 109/165 (66.06%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSS---NPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            N  NRQVTF KRRNGLLKKA+E+SVLCDA+VALIVFS++G+LYE+ +++S+   ++RY++   D      P +  + N   E   L+ ++  +Q   R +LGE L TL  KEL+ LE +LE  +  +RSKKN++L   I  ++K+E  L+N N  L+ ++ E E+
Sbjct:   13 NKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQ-KLMETEK 176          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 73/165 (44.24%), Postives = 109/165 (66.06%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSS---NPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            N  NRQVTF KRRNGLLKKA+E+SVLCDA+VALIVFS++G+LYE+ +++S+   ++RY++   D      P +  + N   E   L+ ++  +Q   R +LGE L TL  KEL+ LE +LE  +  +RSKKN++L   I  ++K+E  L+N N  L+ ++ E E+
Sbjct:   13 NKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQ-KLMETEK 176          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 73/164 (44.51%), Postives = 111/164 (67.68%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSIT-------EANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRI 623
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALIVFS+RG+LYE+ + +S+  T++RY+K C   +  G++T       E ++QQE  KL+ +   +Q   R+++GE L  L+ K+L+ LE +L+  + ++RS + + +L ++  ++++E  L   N  LR R+
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQK-CNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRM 175          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 71/167 (42.51%), Postives = 107/167 (64.07%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEAN-----TQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +  S+  T++RY+K      +     + N     ++ E  KL+ ++  +Q   R++LGE L TL  KEL+ LE +L+  +  +RS + + +L ++  +++RE  L   N  LR ++ E+ +
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQ 179          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 73/167 (43.71%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--ANNSVRATIDRYKKACADSSNPGSITEANTQQ---EATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            NTTNRQVTF KRR GLLKKA+ELSVLCDAE+ LI+FSS G+L+EY  A++S++  I+RY+K      +   ITE + Q    E T+++ +  ++Q   R ++GE L++L   EL +L  +LE    RVRS+KN+++L ++E + ++E  L++ N +L   ++E + A
Sbjct:   13 NTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKV-----SGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAA 174          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT-QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 611
            N+T+RQVTF KRRNGLLKKA ELS+LCDAEV L+VFSS GRLYE+++ +++  IDRY  A  +     + +E    Q+EA  LR+Q+  +Q  ++ ++GE LS L  ++L+ LE RLE  +  +R +K+ +L +EIE +  +   +  +N+ L
Sbjct:   13 NSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIEL 165          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 76/187 (40.64%), Postives = 113/187 (60.43%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERAXXXXXXXXXXXXGGGHVYEPA 704
            N  NRQVTF KRR  LLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++ S+  T+++Y+K C   S   +I    T   QQE  KL+ ++  +Q   R++LGE L  L  KEL+ LE +L+  + ++RS + + +L ++  +++RE  L   N  L+ R  E+ +A              G+  +PA
Sbjct:   13 NKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQK-CNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQPA 198          
The following BLAST results are available for this feature:
BLAST of FC930257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AGL19_ARATH5.836e-3143.67Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
SEP3_ARATH7.622e-3143.03Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MAD56_ORYSI7.622e-3147.27MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD18_ORYSJ9.955e-3144.24MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI9.955e-3144.24MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MTF1_PEA1.300e-3044.51MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MADS8_ORYSJ1.300e-3042.51MADS-box transcription factor 8 OS=Oryza sativa su... [more]
GGM13_GNEGN2.218e-3043.71MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
MAD57_ORYSJ2.896e-3044.44MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL9_ARADE2.896e-3040.64Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]

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Properties
Property NameValue
Genbank descriptionC34005E01EF PostHarvC1 Citrus clementina cDNA clone C34005E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930257 ID=FC930257; Name=FC930257; organism=Citrus clementina; type=EST; length=719bp
AGATAGATATATTTTTTTCTTCTTTCTTTTTTGTCTTTTTCAGGTGTAGC
TCAAGCAAGTTACCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAG
CTCAAGCCAAAGCAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGA
TCGAGAACACAACAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGA
TTGTTGAAGAAAGCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGC
TCTCATCGTCTTCTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACA
GTGTCAGAGCAACAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCT
AACCCAGGATCTATTACTGAAGCTAACACTCAGCAAGAAGCCACAAAACT
ACGAAGACAAATCCGGGAGATTCAGAATTTGAACAGGCACATTCTGGGTG
AGGCCCTCAGCACTTTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGA
CTTGAGAAGGGAATCGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATT
AGCTGAAATCGAGTTCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATA
ACATGTACCTGAGAAGCAGGATATCTGAAAATGAGAGAGCACAACAAGAA
CGGCAATCAGAAAGCATGATGCAGCAAGGAGGAGGGCATGTGTACGAGCC
CGCGGCTTCACAGCCCTAT
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