FC930257

Overview
NameFC930257
Unique NameFC930257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 70/166 (42.17%), Postives = 104/166 (62.65%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS----VRATIDRYKKACADSSNPGSITEANT--QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENE 635
            N  NRQVTF KRR GLLKKA E+SVLCDAEV+LIVFS +G+L+EY++ S    V    +RY  A      P S   A T    E ++L+ +I  ++   RH LGE L  ++ K+L+NLE +LE  +  +RS+KN+++   +  ++++E ++Q +N  L  +I E E
Sbjct:   13 NKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERE 178          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 71/170 (41.76%), Postives = 108/170 (63.53%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK--------ACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EYA +S +   ++RY++           D ++PGS T  N      KL+ ++  +Q   +  +GE L +LN KEL+NLE +L   +  +RS+KN+++   I  ++K++  LQ  N  L  ++ E E+
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLEN-----AKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREK 177          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.217e-28
Identity = 70/165 (42.42%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATI----DRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFSS+G+L+EY+ +S    I    DRY  +             N   E  KL+ ++  ++   R+ +GE L +L+ KEL++LE +L+  I  +RS+KN+ +   I  ++K++  LQ+ N  L  +I E E+
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREK 177          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 67/158 (42.41%), Postives = 107/158 (67.72%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACAD--SSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSR 620
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+ +++S+  T++RY+K   D  S++  +     ++ E   L R+I  ++   R ++GE L   + +EL+ LE +L++ + ++R+KK ++L  E E ++++E  L  +N  L  +
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEK 170          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 63/145 (43.45%), Postives = 103/145 (71.03%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACAD-SSNPGSITEANT-QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREI 584
            N T+RQVTF KRR+GL KKA ELS+LCDAEV L+VFSS  RLY++A++S+++ I+RY +   D      + +EA   QQEA  LR+Q+  +Q  +R +LG+ LS L+ ++L+NLE++LE  +  +R +K+ +++ +I+ + ++ +
Sbjct:   13 NATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMNASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKVV 157          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 66/161 (40.99%), Postives = 111/161 (68.94%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEAN-TQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRIS 626
            NT NRQVTF KRR GL+KKA EL++LCDA+V LIVFS  GRLY+++++S+++ I+RY++A  +     NP  ++EA   Q+E T LR+Q++ + + NR +LGE +S    ++L+ L+ ++E  +  +R+KK+++L  EI  + ++   +Q +N  LR + +
Sbjct:   13 NTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNP--MSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFN 171          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 71/162 (43.83%), Postives = 105/162 (64.81%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADS---SNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISE 629
            N  NRQVTF KRRNGLLKKAYELSVLCDAEV+LIVFS+RG+LYE+ + S +  T++RY+K    S   +N  +    N+ +E  KL+ +   +Q   R++LGE L  LN KEL+ LE +L+  + +VR  K + +L ++  ++ +E  L + N  L  ++ +
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLED 174          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 68/165 (41.21%), Postives = 102/165 (61.82%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATI----DRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FSS+G+L+EY+ +S    I    DRY  +             N   E  KL+ ++  ++   R+ +GE L +L+ KEL++LE +L   I  +RS+KN+ +   I  ++K++  LQ+ N  L  +I E E+
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREK 177          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.030e-27
Identity = 63/159 (39.62%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRI 623
            ++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FSS G+LY++A++S+++ IDRY K+  +     NP S  +   Q+EA  LR+++  +Q  +R ++GE L+ L+  EL +LE ++E  +  +R +K ++L  EI+ + ++   +  +N+ L  ++
Sbjct:   13 DSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPASEVKF-WQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKV 170          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 65/162 (40.12%), Postives = 105/162 (64.81%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITE--ANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENE 635
            N   RQVTF KR++GLLKKAYELSVLCDAEV+LI+FS+ G+LYE++N  V  TI+RY + C D+       E     +QE TKL+ +   +   +R+++GE L  ++ KEL+ LE +LE  +   R +K ++++ ++E + ++E +L + N  L+    +++
Sbjct:   13 NKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYR-CKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLETEDHD 173          
The following BLAST results are available for this feature:
BLAST of FC930257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
CAL_ARATH1.877e-2942.17Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AGL8_SOLCO1.877e-2941.76Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH1.217e-2842.42Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL14_ARATH1.589e-2842.41Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD23_ORYSJ2.076e-2843.45MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MAD25_ORYSJ3.541e-2840.99MADS-box transcription factor 25 OS=Oryza sativa s... [more]
SEP2_ARATH4.624e-2843.83Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AGL8_SINAL4.624e-2841.21Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL21_ARATH1.030e-2739.62Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
AGL13_ARATH1.757e-2740.12Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC34005E01EF PostHarvC1 Citrus clementina cDNA clone C34005E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930257 ID=FC930257; Name=FC930257; organism=Citrus clementina; type=EST; length=719bp
AGATAGATATATTTTTTTCTTCTTTCTTTTTTGTCTTTTTCAGGTGTAGC
TCAAGCAAGTTACCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAG
CTCAAGCCAAAGCAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGA
TCGAGAACACAACAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGA
TTGTTGAAGAAAGCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGC
TCTCATCGTCTTCTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACA
GTGTCAGAGCAACAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCT
AACCCAGGATCTATTACTGAAGCTAACACTCAGCAAGAAGCCACAAAACT
ACGAAGACAAATCCGGGAGATTCAGAATTTGAACAGGCACATTCTGGGTG
AGGCCCTCAGCACTTTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGA
CTTGAGAAGGGAATCGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATT
AGCTGAAATCGAGTTCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATA
ACATGTACCTGAGAAGCAGGATATCTGAAAATGAGAGAGCACAACAAGAA
CGGCAATCAGAAAGCATGATGCAGCAAGGAGGAGGGCATGTGTACGAGCC
CGCGGCTTCACAGCCCTAT
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