FC930257

Overview
NameFC930257
Unique NameFC930257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 54/160 (33.75%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRAT--IDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISE 629
            N++NRQVT+ KRRNG++KKA E+SVLCDA V++I+F+S G+++E+ + S      +D Y K              +   E  +++++   +Q   RH+ GE ++TLN+KEL  LE  LE G   +++K+ E     +  M K    ++ +N  L+ ++ +
Sbjct:   13 NSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHK--LSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEF----VRMMRKHNEMVEEENQSLQFKLRQ 166          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 55/164 (33.54%), Postives = 96/164 (58.54%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRA--TIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            N++NRQVT+ KRRNG++KKA E++VLCDA+V+LI+F + G+++EY + S      +D Y+K              N   E  +++++   +Q   RH+ GE +++LN KEL  LE  L  G+  + +K++E+L      + K +  L+ ++  L+  + + E A
Sbjct:   13 NSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK--TSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEIL----RMVRKNDQILEEEHKQLQYALHQKEMA 170          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 55/160 (34.38%), Postives = 95/160 (59.38%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISEN 632
            N ++RQVTF KRRNGL++KA +LSVLCDA VAL+V S+ G+LY +++ +++   +DRY K  AD      +   + Q +A         ++ ++  ++G  +  ++   L  LE  LE  +   R+KK E++L  +E ++++E  L+ +N  L S++  N
Sbjct:   13 NKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHAD-----DLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENN 167          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 60/167 (35.93%), Postives = 95/167 (56.89%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA--NNSVRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVR---------SKKNEMLLAEIEFMEKREI--QLQNDNMYLRS 617
            N  NR VTF KRRNGL+KKA E++VLCDA+VALI+F+S G++ +Y   +  + A +D+Y+K              N   E  +++++   +Q   RH+ GE + +LN K L  +E  +E G+ +VR          ++NE ++AE    E+R++  QLQ   M + S
Sbjct:   13 NANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQK--LSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAE----EQRQLTFQLQQQEMAIAS 173          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 60/168 (35.71%), Postives = 99/168 (58.93%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSI----TEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            N+TNRQVTF KRR+G+LKKA E+SVLCDAEV +++FSS G+LY+Y +   S+   +++Y+      +N G I       +   E  +++++   +Q   RH+ GE L++L  KEL  +E  L+ GI  V    N+ L+   E   + +  L+++N  L  ++ + + A
Sbjct:   13 NSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ------TNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNV----NDKLMDHWERHVRTDKMLEDENKLLAFKLHQQDIA 170          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 55/153 (35.95%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  198 GLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQQ---EATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            GLLKKA EL++LCDA++ +I+FSS G+++E+++   S+R  IDRY+K    S N   + +   QQ   E T+++ +I ++Q   RH  GE L++L   E+  LE +LE  + +VRS+K ++L  +++ + ++E  L+  N  L   I ++  A
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKL---SGNCAPVYD--NQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQDHHAA 149          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            N T RQVTF KRR GL+KK  ELS+LCDA + LIVFS+ G+L E+ +  N +   IDRY              +     E   LRR+   ++   R   G  L+++   EL  LE +LE  + +VR +KNE++  ++E + ++   L+ DN  +   + E+  A
Sbjct:   13 NQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAA 176          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 53/150 (35.33%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV--RATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 578
            N TNRQVT+ KRRNGL KKA EL+VLCDA+V++I+ SS G+L+E+ + S+  +   D Y+K          +   N+  E  K++ Q+R+++ +NR++       +GE+L+ LN+++L+ L   ++  +  +R +K +++  +IE  +K+
Sbjct:   13 NQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTV-------GVDLWNSHYE--KMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKK 153          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS--VRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 578
            N TNRQVT+ KRR G++KKA EL+VLCDA+VA+I+FSS G+ +E+ + S  ++   DRY++A   S         N Q+  + L+   R ++   R  +GE L  L F EL+ LE  ++  +  VR +K  ++  + E  +K+
Sbjct:   13 NATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSL--WIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKK 153          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--ANNSVRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQN 596
            N TNRQVT+ KRRNGL KKA+EL+VLCDA V++I+FSS  +L+EY   N + +  +D Y+       +  +      Q+   KL    R ++   +  LGE L  L+ +EL+ LE  +E     VR +K + L  +IE  +K+    Q+
Sbjct:   13 NQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQ--TISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQD 159          
The following BLAST results are available for this feature:
BLAST of FC930257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
GLOB_ANTMA3.549e-2033.75Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MADS2_PETHY4.635e-2033.54Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
FLC_ARATH4.635e-2034.38MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
PIST_ARATH1.033e-1935.93Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MADS2_ORYSJ1.349e-1935.71MADS-box transcription factor 2 OS=Oryza sativa su... [more]
AP32_ASAEU1.761e-1935.95MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
TT16_ARATH3.004e-1935.37Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MADS1_PETHY6.693e-1935.33Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD16_ORYSJ6.693e-1937.76MADS-box transcription factor 16 OS=Oryza sativa s... [more]
AP3_ARATH1.947e-1837.58Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC34005E01EF PostHarvC1 Citrus clementina cDNA clone C34005E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930257 ID=FC930257; Name=FC930257; organism=Citrus clementina; type=EST; length=719bp
AGATAGATATATTTTTTTCTTCTTTCTTTTTTGTCTTTTTCAGGTGTAGC
TCAAGCAAGTTACCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAG
CTCAAGCCAAAGCAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGA
TCGAGAACACAACAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGA
TTGTTGAAGAAAGCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGC
TCTCATCGTCTTCTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACA
GTGTCAGAGCAACAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCT
AACCCAGGATCTATTACTGAAGCTAACACTCAGCAAGAAGCCACAAAACT
ACGAAGACAAATCCGGGAGATTCAGAATTTGAACAGGCACATTCTGGGTG
AGGCCCTCAGCACTTTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGA
CTTGAGAAGGGAATCGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATT
AGCTGAAATCGAGTTCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATA
ACATGTACCTGAGAAGCAGGATATCTGAAAATGAGAGAGCACAACAAGAA
CGGCAATCAGAAAGCATGATGCAGCAAGGAGGAGGGCATGTGTACGAGCC
CGCGGCTTCACAGCCCTAT
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