FC930257

Overview
NameFC930257
Unique NameFC930257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 51/143 (35.66%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 578
            N TNRQVT+ KRRNGL KKA+ELSVLCDA+V++I+ SS  +L+EY +   + +   D+Y+KA     +  S      Q+   KL    R ++   R  +GE+L+ L ++++ NL   ++  +  +R +K +++  +I+  +K+
Sbjct:   13 NQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAV--GVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKK 153          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 52/156 (33.33%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV--RATIDRYKKACADSS-NPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLN-FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 611
            + T RQVTF KRR G LKKA EL+VLCDA+V ++VFS +G+L+++ +  V       RY+    ++     +  +     E T+LR +I +++   R   GE LS+++   EL  L+ +LE  + +V ++K+E++  ++E M +    +   N +L
Sbjct:   13 DATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFL 168          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 53/160 (33.12%), Postives = 97/160 (60.62%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEA-LSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISE 629
            N ++RQVTF KRRNGL++KA +LS+LC++ +A++V S  G+LY+ A+ +++   IDRY+   AD        EA    E T+    ++E+  + +  L E+ +   +   L +LE +LE  +   R++K E+++ E++ ++K E  L+ +N  L S++ +
Sbjct:   13 NKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADE------LEALDLAEKTRNYLPLKELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQVGK 166          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACAD-SSNPGSI----TEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENE 635
            N+TNRQVTF KRR G+LKKA E+ VLCDAEV +++FSS G+L +Y      +      +      +N G I       +   E  +++++   +Q   RH+ GE L++L  KEL  +E  L  G   +R K    ++      ++ E  L++++  L  R+ + E
Sbjct:   13 NSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRVHQQE 173          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNR----HILGEALSTLNFKELKNLEARLEKGIGRVRSKK 536
            N TNRQVTF KRRNG++KKA EL+VLCDA+V+L++ SS  +L+ Y +   S++   D Y+K        G        +   +  R++ E+ +L R      +G  L  L   EL  L+  +E+ I ++R+KK
Sbjct:   13 NKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKI------EGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKK 139          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 326
            N  NRQ TF KR+NGL+KKA ELS+LCD E+A+IVFSS  +L++Y++  +   + RY
Sbjct:   15 NERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRY 71          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  165 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 326
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  RL++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 46/142 (32.39%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN---NSVRATIDRYKKACADSSNPGSITEANTQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFME 572
            N T RQ TF KRR+GL KKA EL+VLCDA++ L++FS+ G+LY + +    SVR  ++RY+      +   +      + E  K+      ++   R +  +         L+ LE  LE  + +VRS+K+  +  EI +++
Sbjct:   13 NPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYE--ATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQ 152          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  165 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 326
            NRQVTF KR+ G++KKAYELSVLCD E+ALI+FSS  +LY+YA+  +   + +Y
Sbjct:   16 NRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKY 69          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  165 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKK--ACADSSNPGSITEANTQQE 389
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y +     +S     I EA  ++E
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESGTNSDIVEALNKKE 92          
The following BLAST results are available for this feature:
BLAST of FC930257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
DEFA_ANTMA9.665e-1835.66Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MAD30_ORYSJ2.812e-1733.33MADS-box transcription factor 30 OS=Oryza sativa s... [more]
AGL31_ARATH2.812e-1733.13Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MADS4_ORYSJ1.823e-1632.73MADS-box transcription factor 4 OS=Oryza sativa su... [more]
CMB2_DIACA1.886e-1336.84MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
SRFC_DICDI7.924e-1254.39Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_HUMAN7.924e-1259.26Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MAD32_ORYSJ7.924e-1232.39MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2_DROME1.035e-1159.26Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2A_PIG1.035e-1146.75Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionC34005E01EF PostHarvC1 Citrus clementina cDNA clone C34005E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930257 ID=FC930257; Name=FC930257; organism=Citrus clementina; type=EST; length=719bp
AGATAGATATATTTTTTTCTTCTTTCTTTTTTGTCTTTTTCAGGTGTAGC
TCAAGCAAGTTACCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAG
CTCAAGCCAAAGCAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGA
TCGAGAACACAACAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGA
TTGTTGAAGAAAGCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGC
TCTCATCGTCTTCTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACA
GTGTCAGAGCAACAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCT
AACCCAGGATCTATTACTGAAGCTAACACTCAGCAAGAAGCCACAAAACT
ACGAAGACAAATCCGGGAGATTCAGAATTTGAACAGGCACATTCTGGGTG
AGGCCCTCAGCACTTTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGA
CTTGAGAAGGGAATCGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATT
AGCTGAAATCGAGTTCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATA
ACATGTACCTGAGAAGCAGGATATCTGAAAATGAGAGAGCACAACAAGAA
CGGCAATCAGAAAGCATGATGCAGCAAGGAGGAGGGCATGTGTACGAGCC
CGCGGCTTCACAGCCCTAT
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