FC930261

Overview
NameFC930261
Unique NameFC930261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:13..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 58/150 (38.67%), Postives = 80/150 (53.33%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFP 658
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   + +G I ++ N    G L G   EVL       P
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVLDELTSNVP 174          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.615e-22
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 634
            +G GT +I+L +PP   ++ V+  L  E   ASNIKS+  R +VL  I +   RLK + K P NG+V+ +G +V  +GKEK +T   EP  P+    Y CD+KF+ D L E+L     +G IV+D      G L G   EVL
Sbjct:   20 KGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVL 160          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 634
            RG GT ++S+ +PP  Q+S V K + +E   ++NIKS+  +++V  AI    QRLKL+ K P  GLV++ G +     G EK  T  FEP  PI   +Y C+++F+ + L E+LE  + +G  V+D       TL G   ++L
Sbjct:   23 RGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPKPPEKGLVMFVGMVPRGGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDIL 165          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.664e-21
Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 634
            +G GT ++S+ +PP  Q+S V K + DE G ++NIKS+  R++V  AI    QRLKL+ K P  GLV++ G I     G EK  T  F+P   +    Y CD++F  + L +++E  + +G +V+D   +   TL G   +++
Sbjct:   23 KGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRGKRIDII 165          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20
Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673
            +G  T +ISL +PP  Q+  VT  L DE G A+NIKS++ R +V GAI S   RL+  +KVP NG+V +TG +     K    +    P  PI    Y CD+ F+ + L ++L+  + +G +V+D      G L G   +   +   T P   +K
Sbjct:   23 KGRSTELISLYIPPDKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIVPPDPITVYKYHCDSSFYLEPLEDMLKDKNTYGLLVLDRREATIGLLVGKRIQPFRNLTSTVPGKQRK 177          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 637
            +G GT ++S+ +P   Q+S V K + DE G ++NIKS+  R++V  AI    QR++L+   P NGLVL+ G I     G EK  T  FEP  PI    Y C+N+F  + L  ++E  + +G  V+D       TL G    +L+
Sbjct:   23 KGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKAAPENGLVLFVGMIPRGGPGTEKMETYVFEPPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRGKKVNILN 166          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 56/155 (36.13%), Postives = 80/155 (51.61%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673
            +G GT +ISL +PP  Q+S V   L +E   ASNIKS++ + +V GAI S   RL+ Y  VP NG+V +TG +     K    T   EP +PI    Y CD+ F    L ++L+    +G +V+D      G L+G   E   +   T P   +K
Sbjct:   23 KGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR-YGTVPENGIVYFTGAVDVGANKTNMETTIVEPPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIEAFRNLTSTVPGKQRK 176          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673
            G+GT ++++ +PP  QVS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+VL++G + T  G+   VT   E P  P+ +  Y CD+ F TD L ++L     FG IV+D      G L G   E + S+    P   +K
Sbjct:   29 GSGTQLVTIYIPPDRQVSDVVAHITQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTYPPDNGIVLFSGAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRK 184          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.307e-20
Identity = 54/155 (34.84%), Postives = 79/155 (50.97%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673
            +G  T +ISL +P   Q+  VT  L DE G A+NIKS++ R +V GAI S   RL+  +KVP NG+V +TG +     K    +    P  PI    Y CD+ F+ + L ++L+    FG +V+D      G L G   +   +   T P   +K
Sbjct:   23 KGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIIPPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVGKRIQAFRNLTSTVPGKQRK 177          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19
Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIV-TDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670
            +G GT +ISL +P   ++S V + L +E   ASNIKS+  R++V  AI +  QRLKL  +    G+V++ G +  +  G EK  T   EP  PI   +Y CD++F+ + L E LE  D +G I++D N      + G    +L       P  +K
Sbjct:   23 KGKGTELISLYIPAGRRISDVAQHLREEMSQASNIKSKSTRKNVQSAIEAILQRLKLLKEPLEKGVVIFAGMVPRSGPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKGRNINILKKLTSGVPGKFK 177          
The following BLAST results are available for this feature:
BLAST of FC930261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_PYRFU4.174e-2338.67Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_ARCFU4.615e-2240.14Peptide chain release factor subunit 1 OS=Archaeog... [more]
RF1_METTH1.343e-2137.06Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_METST6.664e-2135.66Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_METMA1.485e-2034.84Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_METS31.939e-2036.81Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_METBU1.939e-2036.13Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_HALWD1.939e-2037.18Peptide chain release factor subunit 1 OS=Haloquad... [more]
RF11_METAC3.307e-2034.84Peptide chain release factor subunit 1-1 OS=Methan... [more]
RF1_METJA2.800e-1934.84Peptide chain release factor subunit 1 OS=Methanoc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005E05EF PostHarvC1 Citrus clementina cDNA clone C34005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930261 ID=FC930261; Name=FC930261; organism=Citrus clementina; type=EST; length=689bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAGTTCAGTGTTGA
CCTTCCCAAGAACATGGAAGAAGTGGACAGTCAGCCCTT
back to top