FC930264

Overview
NameFC930264
Unique NameFC930264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930264 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.695e-69
Identity = 129/183 (70.49%), Postives = 150/183 (81.97%), Query Frame = 2
Query:  209 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIERCEKC*ATML 757
            ++E K++K  R LDE DIALLKTYG   YS  IK+ E +I+ + KK+N+L GIKESDTGLA P+ WDL +DKQ +Q EQPLQVARCTKIIN +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+DVGGCKEQIE+  +   T L
Sbjct:   13 KEEEKEDKPIRSLDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 195          
BLAST of FC930264 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 260.766 bits (665), Expect = 6.004e-69
Identity = 131/183 (71.58%), Postives = 149/183 (81.42%), Query Frame = 2
Query:  209 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIERCEKC*ATML 757
            EDE KD+K  R LDE DIALLKTYG   YS  IK+ E +I+ + KK+N+L GIKESDTGLA P+ WDL +DKQ +Q EQPLQVARCTKII  +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+DVGGCKEQIE+  +   T L
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIITADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 195          
BLAST of FC930264 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.870e-65
Identity = 119/183 (65.03%), Postives = 146/183 (79.78%), Query Frame = 2
Query:  209 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIERCEKC*ATML 757
            +D  ++EKN + LDE DIA+LK YG GPY+  +K  + +I++  KKVN+L G+KESDTGLA P+ WD+ +DKQ MQ+EQPLQVARCTKII  +  D +Y+INVKQ AKFVV L D V+PTDIEEGMRVGVDRNKYQI +PLP KIDP+VTMM VEEKPDVTY+DVGGCK+QIE+  +   T L
Sbjct:   15 DDTKEEEKNFQALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKKVNELSGVKESDTGLAPPALWDIAADKQAMQQEQPLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPL 197          
BLAST of FC930264 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.097e-62
Identity = 115/147 (78.23%), Postives = 133/147 (90.48%), Query Frame = 2
Query:  290 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIER 730
            PYS  IKK EKEI ++A+K+ +L GIKESDTGLA P+QWDLVSDKQMMQEEQPL VA CT+II+PN+EDAKYV+++K+I K+VVGLGDK SPTDIE GMRVGVD+ KYQIQIPLPPKIDPSVTMMTVEEKPD TY+D+GGCKEQIE+
Sbjct:   71 PYSARIKKVEKEINELAEKICNL-GIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEK 216          
BLAST of FC930264 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.432e-62
Identity = 118/176 (67.05%), Postives = 141/176 (80.11%), Query Frame = 2
Query:  209 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIIN--PNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIER 730
            + E +++KNP PLDE DI LLK+Y  GPY+  +   +++ + + K++ND  GIKESDTGLA  S WD+ +D+Q M EEQPLQVARCTKII    ++E   YVIN+KQIAKFVV LG++VSPTDIEEGMRVG DRNKY IQ+PLPPKIDPSVTMM VEEKPDVTY DVGGCKEQIER
Sbjct:   15 DTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFWDVAADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIER 190          
BLAST of FC930264 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.135e-59
Identity = 117/216 (54.17%), Postives = 148/216 (68.52%), Query Frame = 2
Query:  176 QEIHKTMAP-EPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSE------------------------------DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIER 730
            ++  K  AP E +D+  D+    PL E DI +LK+YG  PY+  +K+ E ++KD+  ++ +  G+KESDTGLA    WD++ D+Q + EE PLQVARCTKII  N E                              DAKYVIN+KQIAKFVVGLG++VSPTDIEEGMRVGVDR+KY I++PLPP+IDPSVTMMTVEEKPDVTY+DVGGCK+QIE+
Sbjct:    5 EDWEKYKAPLEDDDKKPDDDKIVPLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGDRQRLGEEHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEK 220          
BLAST of FC930264 vs. ExPASy Swiss-Prot
Match: FB58_ARATH (F-box protein At1g53790 OS=Arabidopsis thaliana GN=At1g53790 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 2
Query:  242 PLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQV 457
            PLDEDDIAL+KTYGL PYS  IKK EKEIK++ +K+NDLCGIKESDTGLA  S       KQMMQE QPLQV
Sbjct:    9 PLDEDDIALVKTYGLVPYSAPIKKVEKEIKELTEKINDLCGIKESDTGLAPLS-------KQMMQEGQPLQV 73          
The following BLAST results are available for this feature:
BLAST of FC930264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PRS7_XENLA2.695e-6970.4926S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_PONAB6.004e-6971.5826S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PRS7_CAEEL6.870e-6565.0326S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7B_ARATH1.097e-6278.2326S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS7_SCHPO1.432e-6267.0526S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS7_YEAST1.135e-5954.1726S protease regulatory subunit 7 homolog OS=Sacch... [more]
FB58_ARATH1.356e-2072.22F-box protein At1g53790 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC34005E09EF PostHarvC1 Citrus clementina cDNA clone C34005E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930264 ID=FC930264; Name=FC930264; organism=Citrus clementina; type=EST; length=761bp
GCCGGGGGACCCGATAAAGAAACTCGTCACCACAGATCGGATCCTACCAC
CTCAAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACACCTCGA
CGACACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATC
TTCCTCTCTAGAACTTGCAAGCAATCAGGAAATTCATAAAACAATGGCAC
CTGAGCCGGAAGATGAGATCAAGGACGAGAAGAATCCCAGACCTCTTGAT
GAAGATGACATTGCACTGCTTAAAACATATGGTTTAGGACCGTATTCTAC
TAGCATAAAGAAAGCAGAGAAGGAGATTAAGGACATGGCCAAGAAAGTCA
ATGACTTGTGTGGTATCAAGGAATCTGACACAGGCTTAGCTGCACCCAGC
CAGTGGGATCTTGTTTCTGATAAGCAGATGATGCAAGAGGAGCAGCCTCT
TCAGGTTGCGAGATGCACCAAGATTATCAATCCAAATTCTGAAGATGCTA
AATATGTAATAAATGTTAAGCAAATTGCCAAGTTTGTCGTTGGGCTTGGT
GACAAAGTTTCCCCTACTGATATTGAAGAAGGGATGCGTGTGGGGGTTGA
CCGGAATAAATATCAAATTCAAATTCCCTTGCCTCCAAAAATTGATCCAA
GTGTAACCATGATGACTGTGGAAGAGAAACCAGATGTGACATATAATGAT
GTTGGTGGATGTAAGGAGCAGATTGAAAGATGCGAGAAGTGTTGAGCTAC
TATGCTTCATC
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