FC930266

Overview
NameFC930266
Unique NameFC930266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930266_ssr34 microsatellite FC930266_ssr34:34..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10339 contig Ccv1_Contig10339:2..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_YERPG (Enolase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 101/179 (56.42%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXA 624
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S +LGKGV KAV+ VN  I  A+ GKD  +Q  ID  M+  LDGT N     K + GANAILAVSLA  KA A  K +PLY+HIAEL+G      +P+P  N+INGG HA N + +QEFMI PV A
Sbjct:    4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVLKAVAAVNGPIAQAVIGKDAKDQANIDKIMI-DLDGTEN-----KSQFGANAILAVSLAAAKAAAASKGMPLYEHIAELNGTPGKFSMPLPMMNIINGGEHADNNVDIQEFMIQPVGA 176          
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_YERPE (Enolase OS=Yersinia pestis GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 101/179 (56.42%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXA 624
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S +LGKGV KAV+ VN  I  A+ GKD  +Q  ID  M+  LDGT N     K + GANAILAVSLA  KA A  K +PLY+HIAEL+G      +P+P  N+INGG HA N + +QEFMI PV A
Sbjct:    4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVLKAVAAVNGPIAQAVIGKDAKDQANIDKIMI-DLDGTEN-----KSQFGANAILAVSLAAAKAAAASKGMPLYEHIAELNGTPGKFSMPLPMMNIINGGEHADNNVDIQEFMIQPVGA 176          
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_YERPB (Enolase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 101/179 (56.42%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXA 624
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S +LGKGV KAV+ VN  I  A+ GKD  +Q  ID  M+  LDGT N     K + GANAILAVSLA  KA A  K +PLY+HIAEL+G      +P+P  N+INGG HA N + +QEFMI PV A
Sbjct:    4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVLKAVAAVNGPIAQAVIGKDAKDQANIDKIMI-DLDGTEN-----KSQFGANAILAVSLAAAKAAAASKGMPLYEHIAELNGTPGKFSMPLPMMNIINGGEHADNNVDIQEFMIQPVGA 176          
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_YERPA (Enolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 101/179 (56.42%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXA 624
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S +LGKGV KAV+ VN  I  A+ GKD  +Q  ID  M+  LDGT N     K + GANAILAVSLA  KA A  K +PLY+HIAEL+G      +P+P  N+INGG HA N + +QEFMI PV A
Sbjct:    4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVLKAVAAVNGPIAQAVIGKDAKDQANIDKIMI-DLDGTEN-----KSQFGANAILAVSLAAAKAAAASKGMPLYEHIAELNGTPGKFSMPLPMMNIINGGEHADNNVDIQEFMIQPVGA 176          
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_YERP3 (Enolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 101/179 (56.42%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXA 624
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S +LGKGV KAV+ VN  I  A+ GKD  +Q  ID  M+  LDGT N     K + GANAILAVSLA  KA A  K +PLY+HIAEL+G      +P+P  N+INGG HA N + +QEFMI PV A
Sbjct:    4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVLKAVAAVNGPIAQAVIGKDAKDQANIDKIMI-DLDGTEN-----KSQFGANAILAVSLAAAKAAAASKGMPLYEHIAELNGTPGKFSMPLPMMNIINGGEHADNNVDIQEFMIQPVGA 176          
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_YERE8 (Enolase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 101/179 (56.42%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXA 624
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S +LGKGV KAV+ VN  I  A+ GKD  +Q  ID  M+  LDGT N     K + GANAILAVSLA  KA A  K +PLY+HIAEL+G      +P+P  N+INGG HA N + +QEFMI PV A
Sbjct:    4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVLKAVAAVNGPIAQAVIGKDAKDQANIDKIMI-DLDGTEN-----KSQFGANAILAVSLAAAKAAAASKGMPLYEHIAELNGTPGKFSMPLPMMNIINGGEHADNNVDIQEFMIQPVGA 176          
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_VARPS (Enolase OS=Variovorax paradoxus (strain S110) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 96/181 (53.04%), Postives = 118/181 (65.19%), Query Frame = 1
Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXASCF 633
            I  +  R+I DSRGNPTVE DV    G + RAAVPSGASTG  EA+ELRDG    YLGKGV KAV N+N  I  ++ G D +EQ  +D  M+  LDGT N     K +LGANA LAVS+A+ +A A    +PLY++   + G   + LPVP  NVINGG+HA N L +QEFMI+PV A  F
Sbjct:    4 IVDIVGREILDSRGNPTVECDVLLESGTMGRAAVPSGASTGSREAIELRDGDKKRYLGKGVLKAVENINTEISESVLGLDASEQAFLDRTMI-DLDGTDN-----KGRLGANATLAVSMAVARAAAEESGLPLYRYFGGMGG---MQLPVPMMNVINGGAHANNSLDLQEFMIIPVGAPSF 175          
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_STAHJ (Enolase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 99/183 (54.10%), Postives = 122/183 (66.67%), Query Frame = 1
Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKD--PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXASCF 633
            IT V AR++ DSRGNPTVEV+V T  G   RA VPSGASTG +EA+ELRDG  S Y GKGV+KAV NVN II P +   +    +Q +ID  M+ QLDGT N     K KLGANAIL VS+A+ +A A +   PLYK++   +G +   LPVP  N++NGGSH+   +A QEFMILP  A  F
Sbjct:    4 ITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYSGKGVTKAVENVNEIIAPEIVEGEFSVLDQVSIDKMMI-QLDGTPN-----KGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQ---LPVPMMNIVNGGSHSDAPIAFQEFMILPTGAESF 177          
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_SERP5 (Enolase OS=Serratia proteamaculans (strain 568) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 101/179 (56.42%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXA 624
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S +LGKGV KAV+ VN  I  A+ GKD  +Q  ID  M+  LDGT N     K + GANAILAVSLA  KA A  K +PLY+HIAEL+G      +P+P  N+INGG HA N + +QEFMI PV A
Sbjct:    4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVLKAVAAVNGPIAQAVLGKDAKDQANIDKIMI-DLDGTEN-----KSQFGANAILAVSLAAAKAAAASKGMPLYEHIAELNGTPGKFSMPLPMMNIINGGEHADNNVDIQEFMIQPVGA 176          
BLAST of FC930266 vs. ExPASy Swiss-Prot
Match: ENO_SALTO (Enolase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=eno PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 97/182 (53.30%), Postives = 124/182 (68.13%), Query Frame = 1
Query:   91 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVXASCF 633
            TI  + AR+I DSRGNPTVEV+V   DG +ARAAVPSGASTG +EA+ELRDG  D YLGKGV++AVSN+   I   L G + +EQ  ID  M+  LDGT N     K +LGANAIL VSLA+ KA A   ++ L+++   L G    +LPVP  N++NGG+HA + + +QEFMI P+ A  F
Sbjct:    3 TIEGIVAREILDSRGNPTVEVEVGLDDGTIARAAVPSGASTGAFEAVELRDGEKDRYLGKGVTQAVSNIEDKIVDELIGYEASEQRLIDQKML-DLDGTDN-----KSQLGANAILGVSLAVAKAAASAAELNLFRY---LGGPNAHLLPVPMMNILNGGAHADSNVDIQEFMIAPIGAPTF 175          
The following BLAST results are available for this feature:
BLAST of FC930266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENO_YERPG1.001e-4156.42Enolase OS=Yersinia pestis bv. Antiqua (strain Ang... [more]
ENO_YERPE1.001e-4156.42Enolase OS=Yersinia pestis GN=eno PE=3 SV=1[more]
ENO_YERPB1.001e-4156.42Enolase OS=Yersinia pseudotuberculosis serotype IB... [more]
ENO_YERPA1.001e-4156.42Enolase OS=Yersinia pestis bv. Antiqua (strain Ant... [more]
ENO_YERP31.001e-4156.42Enolase OS=Yersinia pseudotuberculosis serotype O:... [more]
ENO_YERE81.001e-4156.42Enolase OS=Yersinia enterocolitica serotype O:8 / ... [more]
ENO_VARPS1.001e-4153.04Enolase OS=Variovorax paradoxus (strain S110) GN=e... [more]
ENO_STAHJ1.001e-4154.10Enolase OS=Staphylococcus haemolyticus (strain JCS... [more]
ENO_SERP51.001e-4156.42Enolase OS=Serratia proteamaculans (strain 568) GN... [more]
ENO_SALTO1.001e-4153.30Enolase OS=Salinispora tropica (strain ATCC BAA-91... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005E12EF PostHarvC1 Citrus clementina cDNA clone C34005E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930266 ID=FC930266; Name=FC930266; organism=Citrus clementina; type=EST; length=635bp
GACTTAATCCAAGACTCTTCTCGCACTCACAGACTCTCTCTCTCGTTCTA
GATCTTTCTTCGGTTTTCCAGCTTTCAGAAAATGGCAATAACCATCACTG
CCGTCAAAGCCAGGCAGATCTTTGACAGCCGTGGAAATCCAACGGTGGAG
GTCGACGTGACAACATCAGATGGCCACGTGGCTAGAGCTGCTGTTCCAAG
CGGTGCATCCACCGGAATTTATGAGGCGCTTGAACTAAGAGACGGAGGCT
CTGATTACCTAGGCAAGGGTGTATCGAAGGCTGTTAGCAATGTCAACGCC
ATCATTGGCCCTGCACTCGCTGGCAAGGACCCAACTGAGCAGACTGCTAT
TGACAACTATATGGTACAACAACTTGATGGAACTGTAAATGAGTGGGGTT
GGTGCAAACAGAAGCTTGGAGCAAACGCCATTTTGGCTGTCTCCCTAGCT
ATCTGCAAGGCTGGTGCACATGTCAAGAAGATTCCTCTTTACAAGCATAT
TGCCGAACTCTCTGGTAACAAGAATTTGGTGTTGCCAGTGCCAGCATTCA
ATGTCATTAATGGTGGATCACATGCTGGAAACAAACTTGCTATGCAGGAG
TTTATGATTCTTCCTGTANGAGCTTCCTGTTTCAA
back to top