FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFCCG 482
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++ +  ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMF  G
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-NGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKG 118          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.437e-15
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTY--MFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            +++ INGFGRIGR   R +L+R DD+E+VAVND    TD  T   + K+DS+ G+    E++  DD ++  G K + V+  R+P+ + WA    + V+ESTG FT               VIISAP+ +
Sbjct:    3 IRVGINGFGRIGRNFFRAVLERSDDLEVVAVND---LTDNKTLSTLLKFDSIMGRLGQ-EVEYDDD-SITVGGKRIAVYAERDPKNLDWAAHNVDIVIESTGFFTDANAAKAHIEAGAKKVIISAPASN 126          

HSP 2 Score: 21.9422 bits (45), Expect = 6.437e-15
Identity = 10/23 (43.48%), Postives = 11/23 (47.83%), Query Frame = 1
Query:  442 SQPPARMLLCFVVGVNEHEYKPE 510
            S P +     FV GVN   Y PE
Sbjct:  121 SAPASNEDATFVYGVNHESYDPE 143          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 46/129 (35.66%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            +++ INGFGRIGR V R +     R+ +++VA+ND         ++F+YDSVHG +   E++   +   + G++ + V  +RNP E+PW   G + V+E TG+FT               V+ISAP KD
Sbjct:    3 IRLAINGFGRIGRNVLRALYTGHYREQLQVVAIND-LGDAAVNAHLFQYDSVHGHFPG-EVEHDAESLRVMGDR-IAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKD 128          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_ESCBL (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia blattae GN=gap PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFCCG 482
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++ +  ++VKD   ++ G+K + V   R+P  + W E G E V E+TG+F                V+++ PSKD+ PMF  G
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-NGTVEVKDGHLIVNGKK-IRVTAERDPANLKWNEAGVEVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDSTPMFVRG 118          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFCCG 482
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMF  G
Sbjct:    1 IVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKG 118          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14
Identity = 46/129 (35.66%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA 464
            +++ INGFGRIGR V R I++  R D+E+VA+ND     +   ++ ++DSVHG++         D  +  G  P+ V  +RNP E+PWA  G +  +E TG+FT               V++SAP   A
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAIND-LGQVETNAHLLRFDSVHGRFP--AKVTSGDDWIDVGRGPIKVTAIRNPAELPWA--GVDMAMECTGIFTTKEKAAAHLQNGAKRVLVSAPCDGA 126          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.450e-14
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFCCG 482
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++ +  ++VKD   ++ G K + V   ++P  + W E G + V E+TG+F                V+++ PSKDA PMF  G
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-NGTVEVKDGHLVVNG-KTIRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDATPMFVRG 118          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.450e-14
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP 452
            +K+ ING+GRIGR V R   +   R D+E+VA+ND         ++ +YD+VHG++   E+ V  D   + G++ + V   RNP E+PW E G + V+E TG+FT               VIISAP
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDIEIVAIND-LGNAATNAHLTQYDTVHGRFPG-EVSVDGDAFRVNGDR-IRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLRGGAKKVIISAP 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP 452
            +K+ ING+GRIGR V R   +   R D+E+VA+ND         ++ +YD+VHG++   E+ V  D   + G++ + V   RNP E+PW E G + V+E TG+FT               VIISAP
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDLEIVAIND-LGNAATNAHLTQYDTVHGRFPG-EVSVDGDAFRVNGDR-IRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLKGGAKKVIISAP 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_ESCVU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia vulneris GN=gap PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFCCG 482
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMF  G
Sbjct:    1 IVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDG-TVEVKDGHLVVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRG 118          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3P_CITFR4.983e-1537.19Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_CORGL6.437e-1538.76Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
G3P_PSEAE6.508e-1535.66Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3P_ESCBL6.508e-1537.19Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_ESCFE6.508e-1537.19Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]
G3P2_RHOSH1.110e-1435.66Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_SERMA1.450e-1436.36Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_RALEH1.450e-1438.10Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3PP_RALEH2.473e-1438.10Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3P1_ESCVU2.473e-1436.36Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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