FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.257e-11
Identity = 46/130 (35.38%), Postives = 66/130 (50.77%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            KV++ INGFGRIGR   R    R D  +E+V +ND   T+   T  ++ KYDS+ G +       +D  T+    K + +   RNP ++PW E   + VVE+TGVF                V+I+AP K
Sbjct:   78 KVRVAINGFGRIGRNFIRCWAGRSDSNMEVVCIND---TSGVKTASHLLKYDSILGTFDADVSAGED--TISVNGKTIKIVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIEAGAKKVLITAPGK 202          

HSP 2 Score: 21.1718 bits (43), Expect = 1.257e-11
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  472 FVVGVNEHEY 501
            FVVGVNE +Y
Sbjct:  209 FVVGVNEKDY 218          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.500e-11
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = 3
Query:   72 IMGKVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            +  K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +      V  D   + G K + V   RNP  +PW + G + V+E TGVF                V+I+AP K D P +  G
Sbjct:   54 VEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDG-KVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVG 191          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_HALVA (Glyceraldehyde-3-phosphate dehydrogenase OS=Haloarcula vallismortis GN=gap PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG--EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPM 470
            V++ +NGFGRIGR V R  L  DDVE+V +ND    ++ + Y  +YDSV G+ +   +   DD  L     +    +F   +P ++PW +   +   E+TG+F                V+ISAP K D P+
Sbjct:    6 VRVGLNGFGRIGRNVFRASLHSDDVEIVGINDVMDDSE-IDYFAQYDSVMGELEGASV---DDGVLTVDGTDFEAGIFHETDPTQLPWDDLDVDVAFEATGIFRTKEDASQHLDAGADKVLISAPPKGDEPV 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 47/137 (34.31%), Postives = 67/137 (48.91%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            ++K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +      V  D   + G K + V   RNP  +PW E G + V+E TGVF                V+I+AP K D P +  G
Sbjct:   70 QLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDG-KVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVG 204          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.343e-11
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            +K+ INGFGRIGRL  R I   + +E+VAVND     D + ++ KYD++ G++   E++V +    + G K +  F   +  ++PW +   + V+E TG +T               V+ISAP+K
Sbjct:    3 IKVAINGFGRIGRLAFRRIQDVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVIEGGFRVNG-KEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAK 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.343e-11
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            +K+ INGFGRIGRL  R I   + +E+VAVND     D + ++ KYD++ G++   E++V +    + G K +  F   +  ++PW +   + V+E TG +T               V+ISAP+K
Sbjct:    3 IKVAINGFGRIGRLAFRRIQDVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVIEGGFRVNG-KEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAK 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.343e-11
Identity = 37/127 (29.13%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            +++ ING+GRIGR + R + +   R  +++VA+N+     + + ++ +YD+ HG++ H ++K+ DD  +L G+  + +    +P ++PW E   + V E+TGV                 V+IS PS
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQMQIVAINE-LAKPEAIIHLTQYDTTHGRFAH-KVKLVDDH-MLIGDDAIKILHEPDPTKLPWHEMDIDIVYEATGVLLDRQSCEAHIHAGAKQVLISHPS 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 34/104 (32.69%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF 386
            +K+ INGFGRIGR + R + +    +++++VA+N+     + + ++ KYD+ HG++    +K+ +D   + G+  + +F   NP E+PW   G + V+E TGV+
Sbjct:    3 IKLAINGFGRIGRNIVRALYESGLSNEIKIVAINE-LADPEAIAHLLKYDTSHGRF-FFPVKLGEDTISVAGDA-IALFCEPNPAELPWKTLGVDVVLECTGVY 103          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3PA_CHOCR1.257e-1135.38Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_TOBAC1.500e-1133.57Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_HALVA2.559e-1133.33Glyceraldehyde-3-phosphate dehydrogenase OS=Haloar... [more]
G3PA_PEA2.559e-1134.31Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_STAES3.343e-1133.60Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ3.343e-1133.60Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
E4PD_SHEB23.343e-1129.13D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_PSEHT9.725e-1132.69D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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