FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.162e-30
Identity = 71/143 (49.65%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M K  + INGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W   GA+YVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    1 MSKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGSAGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVG 139          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 66/136 (48.53%), Postives = 85/136 (62.50%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M +V I INGFGRIGR+V R  +  +   +VA+NDPFI  +YM YM KYDS HG + + ++  KD K ++ G K + VF  ++P  IPW + GA YVVESTGVFT               V+ISAPS DAPM+ CG
Sbjct:    1 MSQVNIGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVF-NGDISTKDGKLIVNG-KSIAVFAEKDPSNIPWGQAGAHYVVESTGVFTTIDKASAHIKGGAKKVVISAPSADAPMYVCG 134          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 67/133 (50.38%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ +NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R+P  I W + GA YVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMG 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 70/133 (52.63%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG++K  ++K  ++   + G K V  +  R+P  IPWAETGA+YV+ESTGVFT               VIISAPS DAPMF  G
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK-GDVKFSENGLDVDG-KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 69/142 (48.59%), Postives = 86/142 (60.56%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK------PVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M K K+ INGFGRIGRL  R  +++D V++VA+NDPFI  DYM YMF YDS HG++     K+      L  EK       + VF +++P EI WAE GAEYV+ESTGVFT               V+ISAPS DAPM+  G
Sbjct:    1 MVKPKVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRFNG---KISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEKASAHLKGGAKKVVISAPSADAPMYVMG 139          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 69/136 (50.74%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M  +K+ INGFGRIGR+V R  ++  DVE+VAVNDPFI T Y  YM KYDS HG +       +D   L+   K V  +  R+P  IPW ETGA+YVVESTGVFT               VIISAPS DAPM+  G
Sbjct:    1 MAPIKVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGE--IAQDGNDLVINGKKVKFYTERDPAVIPWKETGADYVVESTGVFTTIDKAKAHLQGGAKKVIISAPSADAPMYVMG 134          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 67/133 (50.38%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ +NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ +  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMG 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 67/135 (49.63%), Postives = 81/135 (60.00%), Query Frame = 3
Query:   78 GKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            GK+KI INGFGRIGRLV R  + R D+E+VA+NDPFI  +YM YMFKYDSVH  W  H    KD    L   + +  F   +P +I W   GA+ V+ESTGVFT               VII+APS DAPM+  G
Sbjct:    3 GKIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKDG--FLVEGRKIHTFTESDPSKINWGAAGADIVIESTGVFTDIAKATAHLTGGAKKVIITAPSNDAPMYVMG 135          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 71/143 (49.65%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M K  + INGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    1 MTKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVG 139          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 71/143 (49.65%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M K  + INGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    1 MPKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVG 139          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3P3_CAEBR7.162e-3049.65Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P_USTMA9.354e-3048.53Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_PIG9.354e-3050.38Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_COCP79.354e-3052.63Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_GLORO9.354e-3048.59Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_COLLN1.222e-2950.74Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_BOVIN1.222e-2950.38Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3PC_CHLRE1.222e-2949.63Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_CAEEL1.222e-2949.65Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL1.222e-2949.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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