FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 66/133 (49.62%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGR+V R  ++ DD+ +VAVNDPFI   Y  YM +YD+ HG +K   ++V D   L+   K V  +  R+P  IPW+ETGA+Y+VESTGVFT               VIISAPS DAPM+  G
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHDDIHIVAVNDPFIEPKYAAYMLRYDTTHGNFK-GTIEV-DGADLVVNGKKVKFYTERDPAAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGRLV R+ LQR  +E+VAVNDPFI+ DY  YMFKYDS HG++K  E+    +  ++ G K + VF  ++P  +PW + G + V++STGVF                V+I+APSK APMF  G
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHGRYK-GEVTTSGNDLVIDGHK-IAVFQEKDPANLPWGKLGVDIVIDSTGVFKELDSAQKHLDAGAKKVVITAPSKTAPMFVVG 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.351e-28
Identity = 65/132 (49.24%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            K+ INGFGRIGR+V R  +   +V++VAVNDPFI T Y  YM KYDS HGQ+K   ++  ++  ++ G+K +  F  R+P  IPW  TGA+Y+VESTGVFT               V+ISAPS DAPMF  G
Sbjct:    4 KVGINGFGRIGRIVFRNAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHGQFK-GTIETYEEGLIVNGKK-IRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPSADAPMFVMG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.351e-28
Identity = 69/142 (48.59%), Postives = 84/142 (59.15%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK------PVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M K  + INGFGRIGRLV R  +++D V++VAVNDPFIT DYM Y+FKYDS HGQ+K     V  D   L  +K       + VF  ++P  I W    A++VVESTGVFT               VIISAPS DAPM+  G
Sbjct:    1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKG---TVTYDGDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVG 139          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.351e-28
Identity = 69/142 (48.59%), Postives = 84/142 (59.15%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK------PVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M K  + INGFGRIGRLV R  +++D V++VAVNDPFIT DYM Y+FKYDS HGQ+K     V  D   L  +K       + VF  ++P  I W    A++VVESTGVFT               VIISAPS DAPM+  G
Sbjct:    1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKG---TVTYDGDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVG 139          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.764e-28
Identity = 68/133 (51.13%), Postives = 83/133 (62.41%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGR+V R  ++  DVE+VAVNDPFI   Y  YM KYDS HG +K   ++V     ++ G K V  +  R+P  IPW +TGAEY+VESTGVFT               VIISAPS DAPM+  G
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIEPKYAEYMLKYDSTHGVFK-GTIQVSGSDLIVNG-KTVKFYTERDPSAIPWKDTGAEYIVESTGVFTTTEKASAHLKGGAKRVIISAPSADAPMYVMG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.764e-28
Identity = 69/133 (51.88%), Postives = 82/133 (61.65%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGR+V R  ++  +V +VAVNDPFI T Y  YM KYDS HGQ+K   + V  +   + G K VT +  R+P  IPW + G EYVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFK-GTIDVNSNGLTVNG-KAVTFYQERDPASIPWGKHGVEYVVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.764e-28
Identity = 66/136 (48.53%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M ++ + INGFGRIGRLV R  LQ+  +++ A+NDPFI   YM YMFKYDS HG++K  E+ ++D K ++ G+  ++VF    P EIPW + GA YVVESTGVF                V++SAPS DAPMF  G
Sbjct:    1 MSELCVGINGFGRIGRLVLRACLQKG-IKVTAINDPFIDLQYMVYMFKYDSTHGRYK-GEVHMEDGKLIVDGQ-AISVFQCMKPAEIPWGDAGALYVVESTGVFLSIEKASAHIQGGAKRVVVSAPSPDAPMFVMG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.764e-28
Identity = 66/129 (51.16%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   99 NGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDK-TLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            NGFGRIG LV R  L R DV++VA+NDPFI  +YM YMFKYDSVHG+   +E  V+ DK  +    + +    + +P +IPW E GA+YVVESTGVFT               V+ISAPS DAPMF  G
Sbjct:    1 NGFGRIGSLVLRATLDRKDVKVVAINDPFIEGEYMAYMFKYDSVHGR---YEGDVQGDKHGITINGEQIKTLAMMDPTQIPWGEVGADYVVESTGVFTTVDKCQAHLKGGAKKVVISAPSADAPMFVMG 126          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.764e-28
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            K+ INGFGRIGR+V R  +    +++VAVNDPFI  DYM YMFKYDS HG+++   ++ K  K ++ G   + V   R+P  I W+ +GAEYV+ESTGVFT               VIISAPSKDAPMF  G
Sbjct:    5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFE-GSVETKGGKLVIDGHS-IDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVG 134          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3P_NEUCR1.034e-2849.62Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P1_KLULA1.034e-2848.12Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_ASPNG1.351e-2849.24Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P4_CAEEL1.351e-2848.59Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P1_CAEEL1.351e-2848.59Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_PODAN1.764e-2851.13Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_AJECA1.764e-2851.88Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3PT_DANRE1.764e-2848.53Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3PC_SCEVA1.764e-2851.16Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_SCHPO1.764e-2850.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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