FC930279

Overview
NameFC930279
Unique NameFC930279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURPS (DNA-directed RNA polymerase subunit beta' OS=Burkholderia pseudomallei GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURPP (DNA-directed RNA polymerase subunit beta' OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURP8 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURP6 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia pseudomallei (strain 668) GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURP1 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia pseudomallei (strain 1710b) GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURP0 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia pseudomallei (strain 1106a) GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURMS (DNA-directed RNA polymerase subunit beta' OS=Burkholderia mallei (strain SAVP1) GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURMA (DNA-directed RNA polymerase subunit beta' OS=Burkholderia mallei GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURM9 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia mallei (strain NCTC 10229) GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
[Close]
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPOC_BURM7 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia mallei (strain NCTC 10247) GN=rpoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  282 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 572
            V++NR PTLH+  I A    +++G K +++H   C+ +NADFDGD+M VH P    ++ EA  ++ A+N  + P+NGDP     QD ++     T++
Sbjct:  421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRE 516
The following BLAST results are available for this feature:
BLAST of FC930279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC_BURPS1.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURPP1.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURP81.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURP61.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURP11.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURP01.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURMS1.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURMA1.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURM91.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURM71.249e-1137.11DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]

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Properties
Property NameValue
Genbank descriptionC34005G03EF PostHarvC1 Citrus clementina cDNA clone C34005G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930279 ID=FC930279; Name=FC930279; organism=Citrus clementina; type=EST; length=688bp
CTCCCTATTTTGCACTAAGGCTCACCTATCCTGAGAGAGTTACTCCTTGG
AATGTCGTAAAGTTAAGGGATTCGATCATTAATGGTGCTGAAATTCATCC
CGGAGCTACGCACTATCTTGATAAGTTGTCCACTATGAGACTGCCGCCAA
ACAAAAAAATGCGAATTTCCATAGGAAGAAAACTAGATACATCAAGAGGA
GCAATTGTGCAGCCTGGAAAGGATTCTGATAATGAATTTGAAGGCAAGAT
GGTGTATCGGCACCTACAGGATGGAGATGTTGTGCTTGTCAATCGGCAGC
CTACGCTTCACAAACCGAGCATAATGGCGCATGTAGTTCGTGTGCTCAAG
GGGGAGAAGACACTTCGAATGCACTATGCCAATTGCAGCACATATAATGC
TGATTTTGATGGTGATGAAATGAATGTTCACTTCCCGCAAGATGAAGTTT
CTCGCGCTGAAGCTTACAATATTGTTAATGCAAATAATCAGTATGTCAGA
CCTTCCAATGGTGATCCGCTTAGATCATTAATCCAGGATCATATTGTCAG
TGCAGCACTTCTGACAAAAAAGGATACTTTCTTAAACCGTGACGAGTTCT
GTCAGCTTCTATATAGTTCTGGTGTTTCCAGTAGTGGGCTAGGTTCTTTC
ACTGGCAAGCCAGGCCAGAGAGTATTAATTTCAGATCA
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