FC930280

Overview
NameFC930280
Unique NameFC930280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3496 contig Ccv1_Contig3496:123..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C71B8_ARATH (Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CYP71B8 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 52/183 (28.42%), Postives = 95/183 (51.91%), Query Frame = 3
Query:   81 LLFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNR--TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLISNTIF 623
            L F ++  + L  F +   S   +LPPGPT  P+IGNL +LG   H S  KL+  HGP+M L+FG V  VV SS   AK++L+++D   C+R   + + ++     +  + +      WR ++K+     F+ ++    +++R ++   L+  + ++ +  T + + +A F  T  +I    F
Sbjct:    7 LCFFFLFPLLLTLFKKLLPS-KWKLPPGPTGLPIIGNLHQLGRLLHSSFHKLSLEHGPVMLLRFGVVPMVVISSKEAAKQVLKSRDLETCSRPKLVANGLFTRNFKD--IAFAQYGEDWREMKKLVGLELFNPKKHKFFRYIREEEGDLLVKKLSKSSQTQTLVDLRKAFFSFTAGIIFRVSF 186          
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C71AP_ARATH (Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=CYP71A25 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 45/156 (28.85%), Postives = 85/156 (54.49%), Query Frame = 3
Query:   81 LLFSWILVVALNYFSRGFKSGSR-RLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQEN 545
            ++  W ++     F +   SG + + PP P   P+IGNL +LG   H+SL  L++ +GP+M L  G+V  ++ SSA MA+EIL+  D +F NR          ++   +   P    WR ++ +C  H  S++ + + + +R ++I  ++A ++++
Sbjct:    5 IILLWSIIFMTILFLKKQLSGKKGKTPPSPPGLPLIGNLHQLGRHTHRSLCDLSRRYGPLMLLHLGRVPVLIVSSADMAQEILKTHDQAFANRPRSKLSQKLLYNNRDVASAPYGEYWRQMKSVCVIHLLSNKMVRSFRDVREEEITLMMAKIRKS 160          
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C75A1_PETHY (Flavonoid 3',5'-hydroxylase 1 OS=Petunia hybrida GN=CYP75A1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 55/165 (33.33%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  135 KSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAH-GHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLISNTIFS 626
            K+  R LPPGP  +PVIG L  LG  PH SLAK+AK +G IM LK G     V S+   AK  L+  D +F NR  P+A   H  ++   M +      W+ LRK+ N H    + L+   ++R  ++  +L  + +  R G  + + +       N+I   + S
Sbjct:   27 KTTGRHLPPGPRGWPVIGALPLLGAMPHVSLAKMAKKYGAIMYLKVGTCGMAVASTPDAAKAFLKTLDINFSNRP-PNAGATHLAYNAQDMVFAHYGPRWKLLRKLSNLHMLGGKALENWANVRANELGHMLKSMSDMSREGQRVVVAEMLTFAMANMIGQVMLS 190          
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C93B1_GLYEC (Licodione synthase OS=Glycyrrhiza echinata GN=CYP93B1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 58/183 (31.69%), Postives = 90/183 (49.18%), Query Frame = 3
Query:   75 PWLLFSWILVVALN---YFSRGFKSGSRRLPPGPT-PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLIS 611
            P L+   +LV AL    +F   F    + LPP P    P+IG++  LG   H+S   L+  +GP+ SL FG V  VV S+   AK++LQ  + +F N  I         +E  + + P    WR ++K+  +    SR ++  QHLR ++   LL  +    RA  A++I +     T N+IS
Sbjct:    3 PQLVAVSVLVSALICYFFFRPYFHRYGKNLPPSPFFRLPIIGHMHMLGPLLHQSFHNLSHRYGPLFSLNFGSVLCVVASTPHFAKQLLQTNELAF-NCRIESTAVKKLTYESSLAFAPYGDYWRFIKKLSMNELLGSRSINNFQHLRAQETHQLLRLLSNRARAFEAVNITEELLKLTNNVIS 184          
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C71BZ_ARATH (Cytochrome P450 71B38 OS=Arabidopsis thaliana GN=CYP71B38 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 52/186 (27.96%), Postives = 98/186 (52.69%), Query Frame = 3
Query:   78 WLLFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNR--TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENC--RAGTAIHIGQAAFGTTLNLISNTIF 623
            +L F  +L ++L  F +   S  + LPPGP   P+IGNL +LG   +KS  K+++ +GP++ L+ G V  +V SS   A+E+L+  D   C R  T    ++ +   + G  + P    WR +RKI     FS ++L + +++R ++ + L+  + ++      +++ + +  F  T ++I    F
Sbjct:    4 FLCFLLLLPLSLILFKKLLPSKGK-LPPGPIGLPIIGNLHQLGKLLYKSFHKISQEYGPVVLLRLGVVPVIVVSSKEGAEEVLKTHDLETCTRPKTAATGLFTYNFKDIG--FAPFGDDWREMRKITTLELFSVKKLKSFRYIREEESELLVKKISKSVDETQNSSVDLRKVLFSFTASIICRLAF 186          
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C71A4_SOLME (Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71A4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 55/189 (29.10%), Postives = 101/189 (53.44%), Query Frame = 3
Query:   72 VPWLLFSWILVVALNYFS------RGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNR---TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLIS 611
            VP L +S ++++ L  F          K+ +  LPP P   P+IGNL +LG  PH+SL KL++ +GP+M L  G    +V SS   A++IL+  D  +  R   +I D++  +G  + G  + P    W  +R I   H  S++++ + + +R ++  +++  +++ C A + I++G+     T N+ S
Sbjct:    3 VPCLWYSLLILLLLFIFLLIHHCFTTSKTQNMFLPPSPRKLPIIGNLHQLGSHPHRSLRKLSQKYGPVMLLHLGSKPVIVASSVDAARDILKTHDHVWATRPKYSIADSL-LYGSKDVG--FSPFGEYWWQVRSIVVLHLLSNKRVQSYRDVREEETANMIEKIRQGCDA-SVINLGEHLCFLTNNITS 187          
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C80A1_BERST (Berbamunine synthase OS=Berberis stolonifera GN=CYP80A1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 52/187 (27.81%), Postives = 92/187 (49.20%), Query Frame = 3
Query:   87 FSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKS----LAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLISNTIFSIDL 635
            F  I +VAL YF   FK     LPP P  +P++G+L +L  K        ++ +A+ +GP++ LKFG  +++  S+   A E+LQ  D     R          H ++ + W    + W+  RKI ++  FS + L A +  R +   +L+ ++    + G  + +    FG  LN++ + +FS D+
Sbjct:    7 FVSISLVALLYFLL-FKPKHTNLPPSPPAWPIVGHLPDLISKNSPPFLDYMSNIAQKYGPLIHLKFGLHSSIFASTKEAAMEVLQTNDKVLSGRQPLPCFRIKPHIDYSILWSDSNSYWKKGRKILHTEIFSQKMLQAQEKNRERVAGNLVNFIM--TKVGDVVELRSWLFGCALNVLGHVVFSKDV 190          
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C75A4_GENTR (Flavonoid 3',5'-hydroxylase OS=Gentiana triflora GN=CYP75A4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 56/184 (30.43%), Postives = 92/184 (50.00%), Query Frame = 3
Query:   84 LFSWILVVALNYFSRGFKSGSR--RLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAH-GHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLISNTIFS 626
            LF +  V  L ++  G  +G R  RLPPGPT +P++G L  LG+ PH + A +AK +G +M LK G     + S+   AK  L+  D +F NR  P+A   H  ++   M +      W+ LRK+ N H    + L+    +R+ ++  +L  + E+ +    + I +       N++S  I S
Sbjct:   16 LFLFFHVQKLVHYLHGKATGHRCRRLPPGPTGWPILGALPLLGNMPHVTFANMAKKYGSVMYLKVGSHGLAIASTPDAAKAFLKTLDLNFSNRP-PNAGATHLAYNAQDMVFAHYGPKWKLLRKLSNLHMLGGKALENWADVRKTELGYMLKAMFESSQNNEPVMISEMLTYAMANMLSQVILS 198          
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C71AD_ARATH (Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=CYP71A13 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 45/175 (25.71%), Postives = 93/175 (53.14%), Query Frame = 3
Query:   54 MDMVSCVPWLLFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQ 578
            M+M+  +   L + I ++ L  F +   +    LPP P   PVIGNL +L   PH+SL  L+  +GP+M L FG+V  +V SS   A+E+L+  D  F NR    A++   +    + + P    WR ++ +C  +  +++ +++ + +R  ++  ++  +++   + ++ ++ +
Sbjct:    1 MEMILSISLCLTTLITLLLLRRFLKRTAT-KVNLPPSPWRLPVIGNLHQLSLHPHRSLRSLSLRYGPLMLLHFGRVPILVVSSGEAAQEVLKTHDHKFANRPRSKAVHGLMNGGRDVVFAPYGEYWRQMKSVCILNLLTNKMVESFEKVREDEVNAMIEKLEKASSSSSSENLSE 174          
BLAST of FC930280 vs. ExPASy Swiss-Prot
Match: C93A3_SOYBN (Cytochrome P450 93A3 OS=Glycine max GN=CYP93A3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 50/161 (31.06%), Postives = 79/161 (49.07%), Query Frame = 3
Query:  153 LPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNR---TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLISNTIFS 626
            LPP P P P+IG+L  L   PH+   KL+  +GPI+ L  G V  VV S+A  AKE L+  + +F NR   T+      +G  +F   + P    W+ ++K+C S       LD    +R+ + +  +  V +   +G A+  G      + N++S  I S
Sbjct:   31 LPPSPMPLPIIGHLHLLSPTPHQDFHKLSLRYGPIIHLFLGSVPCVVASTAEAAKEFLKTHEPAFSNRPANTVAVETLTYGFQDF--LFAPYGPYWKFMKKLCMSELLGGHMLDQFLPVRQXETKKFIKRVLQKGISGEAVDFGGEFITLSNNIVSRMIVS 189          
The following BLAST results are available for this feature:
BLAST of FC930280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
C71B8_ARATH2.380e-1628.42Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CY... [more]
C71AP_ARATH2.380e-1628.85Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=C... [more]
C75A1_PETHY3.109e-1633.33Flavonoid 3',5'-hydroxylase 1 OS=Petunia hybrida G... [more]
C93B1_GLYEC6.926e-1631.69Licodione synthase OS=Glycyrrhiza echinata GN=CYP9... [more]
C71BZ_ARATH6.926e-1627.96Cytochrome P450 71B38 OS=Arabidopsis thaliana GN=C... [more]
C71A4_SOLME6.926e-1629.10Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71... [more]
C80A1_BERST1.181e-1527.81Berbamunine synthase OS=Berberis stolonifera GN=CY... [more]
C75A4_GENTR1.181e-1530.43Flavonoid 3',5'-hydroxylase OS=Gentiana triflora G... [more]
C71AD_ARATH1.543e-1525.71Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=C... [more]
C93A3_SOYBN2.015e-1531.06Cytochrome P450 93A3 OS=Glycine max GN=CYP93A3 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005G04EF PostHarvC1 Citrus clementina cDNA clone C34005G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930280 ID=FC930280; Name=FC930280; organism=Citrus clementina; type=EST; length=721bp
ACACCTGAATTTGGTGTTTACAAGAGCTTCAACAAAAGAGAGCGAGATTA
AAGATGGATATGGTAAGCTGCGTACCATGGCTTCTATTCTCGTGGATTTT
GGTCGTCGCTTTAAATTACTTTTCAAGAGGATTCAAATCTGGATCCAGAA
GGCTTCCACCGGGACCGACGCCTTATCCGGTGATCGGAAACCTCCTGGAA
CTCGGCGACAAACCTCACAAGTCACTTGCTAAACTTGCCAAGATTCATGG
CCCCATAATGAGTCTAAAATTTGGCCAGGTGACCACAGTTGTCTTTTCTT
CTGCAGCCATGGCCAAAGAAATCCTTCAAAATCAAGACACATCTTTCTGT
AATCGAACGATCCCAGACGCAATCTACGCCCACGGCCATCATGAATTCGG
GATGCCCTGGCTGCCTGTGGCGACACTGTGGAGAAATCTTCGAAAAATAT
GCAACTCACATGCTTTCTCTAGTCGCCAACTCGATGCCAATCAGCACCTT
CGGCGTAAGAAAATCCAAGATCTTCTAGCTTATGTCCAAGAAAATTGCCG
TGCAGGTACAGCAATACATATTGGCCAAGCTGCTTTCGGCACTACGCTTA
ATTTGATATCCAACACAATTTTTTCTATTGACTTGGCTGATCCCACATCA
AAACTGCGCGAGAGTTTAAGCAAACAATTGGGGTATGATGGAAGAGCTGG
AAAGCTACTTTGTCGATTTTT
back to top