FC930285

Overview
NameFC930285
Unique NameFC930285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.972e-42
Identity = 76/138 (55.07%), Postives = 102/138 (73.91%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH8102) GN=ispH PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.447e-41
Identity = 78/138 (56.52%), Postives = 100/138 (72.46%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ + G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V  GDVV+LPAFGA V
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYKLSHGRLTVRLAEAFGFCWGVERAVAMAYETRKHYPAERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_SYNSC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9605) GN=ispH PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.889e-41
Identity = 78/138 (56.52%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG+    G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V  GDVV+LPAFGA V
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYRLEHGRLNVRLAEAFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 72/138 (52.17%), Postives = 107/138 (77.54%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D K F+ +L +S+NY+R+GFG  E  + +MN EY S +I+++++N +++  GNV + LA+++GFCWGVERAV +AYE R+ FP+E IWITNE+IH+P+VN+RLE+M ++ I V  G+K F  +  GDVV+LPAFGA+V
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQTEAAMGVMNTEYQSSLIQQIRQNNYQWKQGNVTIHLAQAFGFCWGVERAVAMAYETRQHFPKESIWITNELIHHPSVNQRLEQMEIKFIEVINGQKDFSQIKSGDVVILPAFGASV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.209e-41
Identity = 74/138 (53.62%), Postives = 104/138 (75.36%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D K F+ +L  S+NYNR+GFGH+ E    +  EY S++I+++++  +    G+V ++LA+++GFCWGVERAV +AYE R+ FP E IWITNEIIHNP+VN+R++EM V+ IP+E   K F VV  GDVV+LPAFGA+V
Sbjct:    2 DTKAFKRSLQHSENYNRKGFGHQAEVATQLQSEYQSNLIQEIRDRNYILQRGDVTIRLAQAFGFCWGVERAVAMAYETRQHFPTEHIWITNEIIHNPSVNQRMQEMEVEFIPIEGKNKDFSVVGTGDVVILPAFGASV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.497e-41
Identity = 78/138 (56.52%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ T G + V LAE++GFCWGVERAV +AYE R+ +P E++WITNEIIHNP+VN  L EM V  IPVEEG K F  V  GDVV+LPAFGA V
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAENLEQAYQSGLIGTIRDNGYKLTHGRLNVHLAEAFGFCWGVERAVAMAYETRRHYPSERLWITNEIIHNPSVNDHLREMDVLFIPVEEGVKDFSGVTSGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH7803) GN=ispH PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.497e-41
Identity = 77/138 (55.80%), Postives = 97/138 (70.29%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D   F+ +L  SD YNRRGFG  EE    + Q Y S +I  +++NG+    G ++V+LA+ +GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V  GDVV+LPAFGA V
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRAEEVAGSLEQAYQSSLIGSIRDNGYRLNHGRLQVRLAKDFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMNVQFIPVEQGVKDFSGVTSGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.497e-41
Identity = 78/139 (56.12%), Postives = 106/139 (76.26%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV-EEGKKQFDVVNKGDVVVLPAFGAAV 671
            D K F+ +L  S+ Y+R+GFGH+ E  E++  EY S +I++++ENG  +  G V ++LAE++GFCWGVERAV +AYE R+ FP E+IWITNEIIHNP+VN+ L EM V+ IPV E+G+K F VV   DVV+LPAFGA+V
Sbjct:    2 DTKAFKRSLHSSNQYHRKGFGHEAEVTEMLRFEYQSSLIQQIRENGNRFQRGEVTIQLAEAFGFCWGVERAVALAYETRQHFPTERIWITNEIIHNPSVNQNLREMQVEFIPVDEQGQKDFSVVAGEDVVILPAFGASV 140          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.938e-40
Identity = 77/138 (55.80%), Postives = 97/138 (70.29%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D   F+ +L  SD YNRRGFG  +E    + Q Y S +I  +++NG+  T G +KV+LAE++GFCWGVERAV +AYE R+ +P+E+IWITNEIIHNP+VN  L EM V  I VE G K F  V  GDVV+LPAFGA V
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRADEVAGSLEQAYQSSLIGSIRDNGYSLTHGRLKVRLAEAFGFCWGVERAVAMAYETRRHYPQERIWITNEIIHNPSVNDHLREMDVLFISVEGGVKDFSGVATGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROMS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain AS9601) GN=ispH PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.354e-39
Identity = 73/138 (52.90%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF YT G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYTKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATV 139          
The following BLAST results are available for this feature:
BLAST of FC930285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_ANASP4.972e-4255.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPX1.447e-4156.524-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNSC1.889e-4156.524-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP83.223e-4152.174-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NOSP74.209e-4153.624-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS95.497e-4156.524-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPW5.497e-4155.804-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP45.497e-4156.124-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS37.938e-4055.804-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMS1.354e-3952.904-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC34005G10EF PostHarvC1 Citrus clementina cDNA clone C34005G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930285 ID=FC930285; Name=FC930285; organism=Citrus clementina; type=EST; length=672bp
GGAGCACGGTTCATAGTTCATTCTCAGACTCCACGCCGTCCGCTAACTTT
TGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGAC
GACTCTGCAATTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCA
GTAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATC
GTCAGGTGCTCCGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGC
CGAATTTGACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATT
ACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAAT
CAGGAGTACACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGA
GTATACTTGGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTT
GCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAG
TTTCCTGAGGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAAC
TGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGG
AAGGAAAGAAGCAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTG
CCTGCATTTGGGGCTGCAGTTG
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