FC930285

Overview
NameFC930285
Unique NameFC930285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROM0 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9301) GN=ispH PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.354e-39
Identity = 73/138 (52.90%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF YT G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYTKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.720e-39
Identity = 72/138 (52.17%), Postives = 97/138 (70.29%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF Y  G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYNKGRLNIKLAKAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_TRIEI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=ispH PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.497e-38
Identity = 69/138 (50.00%), Postives = 102/138 (73.91%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D K F   L +S+NYNR+GFGH +E   LM   Y S++I++++EN +    G V +KLA+++GFCWGVER+V +AYE R+ FP ++IWI+ E+IHNP+VN+ +++M ++ IPV +G+K F V    DVV+LPAFGA+V
Sbjct:    2 DTKAFTRALKKSENYNRQGFGHAQEVATLMQSAYKSNLIQQIRENNYTLQRGEVTIKLAKTFGFCWGVERSVAMAYETRQHFPNQQIWISYELIHNPSVNQDMKDMEIKFIPVIDGQKDFSVAGNNDVVILPAFGASV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROMM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispH PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.497e-38
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + F+ +L  S+ YNRRGFG   E    + + Y S +I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E+IWITNEIIHNP+VN+ L EM V  I  E G K F  VN GDVV+LPAFGA V
Sbjct:    2 DTQAFKRSLHHSERYNRRGFGRANEVASNLEKAYQSSLIGSIRDNGYVLQHGRLQVKLAEAFGFCWGVERAVAMAYETRRHYPSERIWITNEIIHNPSVNEHLREMDVLFIHAEGGVKDFSCVNDGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.356e-38
Identity = 75/138 (54.35%), Postives = 96/138 (69.57%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + F+  L +SD YNRRGFG   +  + + + Y S +I  ++ENG     G +KVKLAE++GFCWGVER+V +AYE RK +P E+IWITNEIIHNP+VN  L +M V  I  E+G K F VV  GDVV+LPAFGA V
Sbjct:    2 DTQAFKQTLHKSDRYNRRGFGSANKRAQALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.356e-38
Identity = 75/138 (54.35%), Postives = 96/138 (69.57%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + F+  L +SD YNRRGFG   +  + + + Y S +I  ++ENG     G +KVKLAE++GFCWGVER+V +AYE RK +P E+IWITNEIIHNP+VN  L +M V  I  E+G K F VV  GDVV+LPAFGA V
Sbjct:    2 DTQAFKQTLHKSDRYNRRGFGSANKRAQALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROMP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.689e-38
Identity = 71/138 (51.45%), Postives = 96/138 (69.57%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  ++ N F Y  G + +KLA+++GFCWGVERAV +AYE R+ +P+E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLITSIRNNSFTYKKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPDENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSDGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROM3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9303) GN=ispH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.689e-38
Identity = 73/138 (52.90%), Postives = 96/138 (69.57%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + F+ +L  S+ YNRRGFG   E    + + Y S +I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E+IWITNEIIHNP+VN+ L EM V  I  E G K F  V+ GDVV+LPAFGA V
Sbjct:    2 DTQAFKRSLHHSERYNRRGFGRANEVASNLEKAYQSSLIGSIRDNGYVLQHGRLQVKLAEAFGFCWGVERAVAMAYETRRHYPSERIWITNEIIHNPSVNEHLREMDVLFIHAEGGVKDFSCVSDGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROM4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=ispH PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.655e-37
Identity = 71/138 (51.45%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+ +  G ++VKLAE++GFCWGVERAV +AYE R+ +P+E IWITNEIIHNP+VN  L  M V+ I  E+G K F  V +GDVV+LPAFGA V
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPTKRAQALEKAYQSNLIGSIRDNGYLFEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPKESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKNFSSVQEGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37
Identity = 71/138 (51.45%), Postives = 96/138 (69.57%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L  M V+ I  E+G K F  V +GDVV+LPAFGA V
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPAKRAQALEKAYQSNLIASIRDNGYLLEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPTESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKDFSSVEEGDVVILPAFGATV 139          
The following BLAST results are available for this feature:
BLAST of FC930285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM01.354e-3952.904-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM96.720e-3952.174-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_TRIEI1.497e-3850.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMM1.497e-3853.624-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMT4.356e-3854.354-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM14.356e-3854.354-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMP5.689e-3851.454-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM35.689e-3852.904-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM41.655e-3751.454-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMA6.290e-3751.454-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC34005G10EF PostHarvC1 Citrus clementina cDNA clone C34005G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930285 ID=FC930285; Name=FC930285; organism=Citrus clementina; type=EST; length=672bp
GGAGCACGGTTCATAGTTCATTCTCAGACTCCACGCCGTCCGCTAACTTT
TGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGAC
GACTCTGCAATTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCA
GTAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATC
GTCAGGTGCTCCGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGC
CGAATTTGACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATT
ACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAAT
CAGGAGTACACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGA
GTATACTTGGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTT
GCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAG
TTTCCTGAGGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAAC
TGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGG
AAGGAAAGAAGCAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTG
CCTGCATTTGGGGCTGCAGTTG
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