FC930285

Overview
NameFC930285
Unique NameFC930285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_PROM5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9515) GN=ispH PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36
Identity = 68/138 (49.28%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            D +  +H++  S  YNR+GF    +  + + + Y SD+I  ++EN F +  G +K+KLA+S+GFCWGVERAV +AYE R+ +P E IW+TNEIIHNP+VN  L  M V+ I  + G K F  V+ GDVV+LPAFGA V
Sbjct:    2 DTQAIKHSVQHSGRYNRKGFESPTQRAKALGESYQSDLIASIRENNFSFEKGRLKIKLAKSFGFCWGVERAVAMAYETRRHYPNEDIWMTNEIIHNPSVNNHLSRMNVKIISAKNGIKDFSSVSTGDVVILPAFGATV 139          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 3
Query:  342 LMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 671
            +MN EY S +I+++++N +    G+V + LAE++GFCWGVERAV +AYE R+ FP +++WITNEIIHNP+VN+RL EM V  I V  G+K F  V KGDVV+LPAFGA+V
Sbjct:    3 VMNTEYQSHLIQEIRQNNYRLERGDVTILLAEAFGFCWGVERAVAMAYETRQHFPGDRLWITNEIIHNPSVNQRLREMEVNFIDVVNGEKDFSGVAKGDVVILPAFGASV 112          
BLAST of FC930285 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.234e-29
Identity = 60/131 (45.80%), Postives = 88/131 (67.18%), Query Frame = 3
Query:  288 RSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG----KKQFDVVNKGDVVVLPAFGAA 668
            +S NY R+GFG K E  + +  EY S +I +++ NG+    G V V+LAE++GFCWGV++AV +AYE  + F   ++WITNEIIHNP VN+ L  M ++ +  +E      K F+ V++ DVV+LPAFGA+
Sbjct:    2 QSKNYFRKGFGLKAEVQDDLKAEYESSLIHEIRANGYTLRRGGVTVRLAEAFGFCWGVDKAVSMAYETHRMFAGRQLWITNEIIHNPLVNQHLRAMGIRFLDEDESGRRVPKDFERVSEKDVVILPAFGAS 132          
The following BLAST results are available for this feature:
BLAST of FC930285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM51.830e-3649.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY33.572e-3257.274-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI8.234e-2945.804-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC34005G10EF PostHarvC1 Citrus clementina cDNA clone C34005G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930285 ID=FC930285; Name=FC930285; organism=Citrus clementina; type=EST; length=672bp
GGAGCACGGTTCATAGTTCATTCTCAGACTCCACGCCGTCCGCTAACTTT
TGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGAC
GACTCTGCAATTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCA
GTAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATC
GTCAGGTGCTCCGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGC
CGAATTTGACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATT
ACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAAT
CAGGAGTACACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGA
GTATACTTGGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTT
GCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAG
TTTCCTGAGGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAAC
TGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGG
AAGGAAAGAAGCAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTG
CCTGCATTTGGGGCTGCAGTTG
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