FC930289

Overview
NameFC930289
Unique NameFC930289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10223 contig Ccv1_Contig10223:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: CCPR_CANAL (Cytochrome c peroxidase, mitochondrial OS=Candida albicans GN=CCP1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.157e-31
Identity = 70/164 (42.68%), Postives = 101/164 (61.59%), Query Frame = 3
Query:  180 MLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK---AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELL 659
            +LR+AWH++GTYD    +GG +G TM  A E+    N GL +    L  F  ++P IS  DL+ L GV  V+ +GGP I + PGR D    ++ P  GRLPDA +   +++ +F A+MG ++++ VAL G H LGRCHK  SG++GPW  +   F N ++T LL
Sbjct:  117 LLRLAWHTSGTYDKSDNSGGSYGGTMIFAPEEFDPENAGLQVGREFLMEFLVKYPWISRGDLWTLGGVAAVQESGGPKIEWRPGRVDDNTASKVPPNGRLPDASKDGKYVKDLF-ARMGFNERETVALLGAHVLGRCHKHNSGYDGPWGPSFNQFTNVFYTTLL 279          
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: APX6_ARATH (Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 70/217 (32.26%), Postives = 110/217 (50.69%), Query Frame = 3
Query:   87 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFK---EQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELL------TGEKDGLLQLPSDKXLL 710
            YP +  + +K V K K            A  +LR+ +H AGT+++   +GG  G+  +A E     N GL  ++++L   K   ++   +S+AD+  +AG   V + GGP IP   GR D A+P  EG+LP        L++ F  + G S +++VALSG HT+G       GF      +P +FDN+Y+  LL      T +   ++ LPSD  L+
Sbjct:   98 YPVMQNEIRKVVTKGK------------AAGVLRLVFHDAGTFELDDHSGGINGS--IAYELERPENIGLKKSLKVLAKAKVKVDEIQPVSWADMISVAGSEAVSICGGPTIPVVLGRLDSAQPDPEGKLPPETLSASGLKECF-KRKGFSTQELVALSGAHTIG-----SKGF-----GDPTVFDNAYYKILLEKPWTSTSKMTSMVGLPSDHALV 289          
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: KATG_ERYLH (Catalase-peroxidase OS=Erythrobacter litoralis (strain HTCC2594) GN=katG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 79/257 (30.74%), Postives = 104/257 (40.47%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP---------------------PQEGRL----------------PDAKQGNDH--------LRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKER-----------------------------------SGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPS 695
            P  +R+AWH+AGTY      GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ L G V +E  GGP   F  GR D  EP                     P EGR                 P+   G+ H        +R+ F A+M ++D++ VAL +GGH  G+CH  +                                   SG EGPWT NP  + N YF  L   E + L Q P+
Sbjct:   95 PFFIRMAWHAAGTYRTGDGRGGSSSGQQRFAPLNSWPDNGNLDKARRLLWPIKQKYGKHISWADLFILTGNVAIESMGGPVFGFGGGRKDVYEPEMVYWGTEEQWVDTGAETRIHPDEGRALENPLAAIQMGLIYVNPEGPGGDPHDPEGMARDMRETF-ARMAMNDEETVALTAGGHAFGKCHGAKPADTFGTAPEGENLHLMGMGWLTDEEEIRNGHVTTSGIEGPWTPNPTQWGNDYFRLLFKYEYE-LTQSPA 349          
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: KATG_BACHD (Catalase-peroxidase OS=Bacillus halodurans GN=katG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 76/253 (30.04%), Postives = 107/253 (42.29%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE-----------------------------------------GRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH-------------------------------KER----SGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPS 695
            P  +R++WH+AGTY +   + GG  G  R A   +   N  LD A RLL P K+++   IS+ADL  LAG V +E  GGP I F  GR+D   P ++                                            PD  +    +R+ FG +MG++D++ VAL +GGHT G+ H                               K R    SG EG WT NP  +DN +F +LL G +  L + P+
Sbjct:   91 PFFIRMSWHAAGTYRIGDGRGGGGTGNQRFAPLNSWPDNGNLDKARRLLWPIKQKYGNKISWADLLVLAGNVAIEDMGGPVIGFGAGREDIWHPEEDIYWGSEKEWLTGDKRYSGDRELENPLAAVEMGLIYVNPEGPDGKPDPIKAAHDIRETFG-RMGMNDEETVALIAGGHTFGKAHGAGNPDHVGPEPEAAPIEAQGLGWQNTYGSGKGRDTITSGLEGAWTANPTQWDNGFF-DLLFGYEWWLTKSPA 341          
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: KATG_GEOKA (Catalase-peroxidase OS=Geobacillus kaustophilus GN=katG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 76/243 (31.28%), Postives = 99/243 (40.74%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE----------------------------------------GRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH-------------------------------KER----SGFEGPWTRNPLIFDNSYFTELLTGE 668
            PL +R+AWHSAGTY +   + GG  GT R A   +   N  LD A RLL P K+++   IS+ADL  LAG V +E  GG  I F  GR+D   P ++                                           PD       +R+ F  +MG++D++ VAL +GGHT G+ H                               K R    SG EG WT  P  +DNSYF  L   E
Sbjct:   93 PLFIRMAWHSAGTYRIGDGRGGGSTGTQRFAPLNSWPDNANLDKARRLLWPIKKKYGNKISWADLMILAGNVAIESMGGKTIGFGGGREDVWHPEEDIYWGAEKEWLASERYSGDRELENPLAAVQMGLIYVNPEGPDGKPDPVAAARDIRETF-RRMGMNDEETVALIAGGHTFGKAHGAGPASHVGPEPEAAPIEAQGLGWISSYGKGKGRDTITSGIEGAWTPTPTQWDNSYFRLLFEYE 334          
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: KATG_GEOTN (Catalase-peroxidase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=katG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 75/239 (31.38%), Postives = 97/239 (40.59%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------EGRL----------------------PDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE-----------------------------------RSGFEGPWTRNPLIFDNSYFTEL 656
            PL +R+AWHSAGTY +    GG   GT R A   +   N  LD A RLL P K+++   IS+ADL+ LAG V +E  GG  I F  GR D   P +                  +G L                      PD K     +R+ F  +MG++D++ VAL +GGHT G+ H                                      SG EG WT  P  +D SYF  L
Sbjct:   93 PLFIRMAWHSAGTYRIGDGRGGASTGTQRFAPLNSWPDNANLDKARRLLWPIKKKYGNKISWADLFILAGNVAIESMGGKTIGFGGGRVDVWHPEEDIYWGAEKEWLASERHSDDGELEHPLAASVMGLIYVNPEGPDGKPDPKAAARDIRETF-RRMGMNDEETVALIAGGHTFGKAHGAGPATHVGPEPEAAPIEAQGLGWMSSYGKGKGSDTITSGIEGAWTPTPTQWDMSYFDML 330          
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: KATG_BACST (Catalase-peroxidase OS=Bacillus stearothermophilus GN=katG PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 73/239 (30.54%), Postives = 95/239 (39.75%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE----------------------------------------GRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE-----------------------------------RSGFEGPWTRNPLIFDNSYFTEL 656
            PL +R+AWHSAGTY +    GG   GT R A   +   N  LD A RLL P K+++   IS+ADL+ LAG V +E  GG  I F  GR D   P ++                                           PD K     +R+ F  +MG++D++ VAL +GGHT G+ H                                      SG EG WT  P  +D SYF  L
Sbjct:   93 PLFIRMAWHSAGTYRIGDGRGGASTGTQRFAPLNSWPDNANLDKARRLLWPIKKKYGNKISWADLFILAGNVAIESMGGKTIGFGGGRVDVWHPEEDVYWGSEKEWLASERYSGDRELENPLAAVQMGLIYVNPEGPDGKPDPKAAARDIRETF-RRMGMNDEETVALIAGGHTFGKAHGAGPATHVGPEPEAAPIEAQGLGWISSYGKGKGSDTITSGIEGAWTPTPTQWDTSYFDML 330          
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: KATG_SACD2 (Catalase-peroxidase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=katG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 62/178 (34.83%), Postives = 89/178 (50.00%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGPFGTM-RLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ-----EGRL---------------------------PDAKQGN-------DHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            P  +R++WH+AGTY +    GG  G M R A   +   N  LD A RLL+P K+++   +S++DL  LAG +G+E  G P + F  GRDD+ EP +     EG+                            P+   GN         +RQ FG +MG+SD++ VAL +GGHT G+ H
Sbjct:   97 PFFIRLSWHAAGTYRMIDGRGGADGGMQRFAPLNSWPDNASLDKARRLLQPIKQKYGNNLSWSDLLVLAGTIGMEDMGFPIVGFAFGRDDEWEPEEVNWGPEGQWLTDRRHSGDRKLDKPFGATEMGLIYVNPEGPHGNPDPIAAAHDIRQAFG-RMGMSDEETVALIAGGHTFGKAH 273          
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: KATG_JANSC (Catalase-peroxidase OS=Jannaschia sp. (strain CCS1) GN=katG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 79/256 (30.86%), Postives = 103/256 (40.23%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ----------------------EGR----------------LPDAKQGN-DHLRQVFG-----AQMGLSDKDIVAL-SGGHTLGRC-----------------------------------HKERSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPS 695
            PLM+R+AWHSAGTY      GG   GT R A   +   N  LD A R+L P KE++  ++S+ADL  L G V +E  G     F  GR D  EP +                      EGR                 P    GN D L   F      A+M ++D++ VAL +GGHT G+                                    H   SG EGPWT  P  +D SYF ++L G +  L + P+
Sbjct:   93 PLMIRLAWHSAGTYRTYDGRGGAGTGTQRFAPLNSWPDNGNLDKARRILWPIKEKYGKSLSWADLLILVGNVALEDMGFETFGFAGGRADVWEPEEDIYWGPETEWLATSDMENTRYGEGRDLHNPLAAVQMGLIYVNPQGPDGNPDPLASAFDIRDTFARMAMNDEETVALVAGGHTFGKAHGAGDPDLVGAEPEGADVAEMGLGWKNGFESGKGVHSTTSGVEGPWTPTPTQWDMSYF-DVLFGHEWELTKSPA 347          
BLAST of FC930289 vs. ExPASy Swiss-Prot
Match: KATG_FRASN (Catalase-peroxidase OS=Frankia sp. (strain EAN1pec) GN=katG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 78/251 (31.08%), Postives = 103/251 (41.04%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP-------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCHKE-----------------------------------RSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPS 695
            P M+R+AWHSAGTY +   + GG  G  R A   +   N  LD A RLL P K+++   +S+ADL  LAG V +E  G     F  GR+D  EP       P+   L D +  G+  L    GA QMGL                               D++ VAL +GGHT G+ H                                      SG EG WT  P+ +DNS+F E L G +  L + P+
Sbjct:  101 PFMIRMAWHSAGTYRISDGRGGGGAGQQRFAPLNSWPDNGNLDKARRLLWPVKKKYGQALSWADLMILAGNVALESMGFTTFGFAGGREDVWEPDEDVYWGPETTWLGDERYTGDRELENPLGAVQMGLIYVNPEGPNGTPDPLAAARDIRETFRRMAMDDEETVALIAGGHTFGKTHGAGDPDNVGPEPEGAPLETQGLGWKNAFGTGKGADAITSGLEGAWTPTPVSWDNSFF-ETLFGYEWALTKSPA 350          
The following BLAST results are available for this feature:
BLAST of FC930289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
CCPR_CANAL1.157e-3142.68Cytochrome c peroxidase, mitochondrial OS=Candida ... [more]
APX6_ARATH4.561e-2032.26Putative L-ascorbate peroxidase 6 OS=Arabidopsis t... [more]
KATG_ERYLH9.510e-1830.74Catalase-peroxidase OS=Erythrobacter litoralis (st... [more]
KATG_BACHD6.164e-1730.04Catalase-peroxidase OS=Bacillus halodurans GN=katG... [more]
KATG_GEOKA1.793e-1631.28Catalase-peroxidase OS=Geobacillus kaustophilus GN... [more]
KATG_GEOTN3.059e-1631.38Catalase-peroxidase OS=Geobacillus thermodenitrifi... [more]
KATG_BACST5.218e-1630.54Catalase-peroxidase OS=Bacillus stearothermophilus... [more]
KATG_SACD26.815e-1634.83Catalase-peroxidase OS=Saccharophagus degradans (s... [more]
KATG_JANSC3.382e-1530.86Catalase-peroxidase OS=Jannaschia sp. (strain CCS1... [more]
KATG_FRASN1.285e-1431.08Catalase-peroxidase OS=Frankia sp. (strain EAN1pec... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005H03EF PostHarvC1 Citrus clementina cDNA clone C34005H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930289 ID=FC930289; Name=FC930289; organism=Citrus clementina; type=EST; length=714bp
GGTGCTCTGCTCGTGCCACTCTCGTTTGTTAAGGATTTGCGTCTCTCTTT
CTCATTTCATTCAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAG
CGAGGATTACAAGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCT
TCATCGCTGAGAAGAACTGCGCTCCACTCATGCTCCGTATCGCGTGGCAC
TCAGCTGGTACATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAAC
CATGAGGCTCGCTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATA
TTGCCGTTAGGCTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCC
TACGCTGACCTTTATCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGG
TGGGCCCGATATCCCCTTCCACCCGGGAAGAGATGACAAGGCTGAGCCAC
CTCAAGAAGGCCGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGG
CAAGTCTTTGGTGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCT
CTCTGGTGGCCACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTTG
AGGGACCATGGACCCGCAACCCTCTCATTTTTGACAATTCCTACTTCACG
GAGCTCTTGACTGGTGAGAAGGATGGTCTTCTGCAATTGCCATCCGACAA
GGNCCTTCTGGATG
back to top