FC930290

Overview
NameFC930290
Unique NameFC930290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 1
Query:  202 IPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTQPTL 711
            + VV+T++ G+ ++G L   N NG L P    + E++ +R      V V  +  +++A+GN +  NDH AL H DLD    E+I  VLG  V R  + G   VGS    +++G +VHP  + E+++ +S +L V +  GTVNRGS  +G G+ VN   A  G DTT P L
Sbjct:   45 VEVVRTTVAGSNLVGALLAVNSNGALFPRHAREHEIRVVREL---GVEVDVLPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGIVVNSKGAVVGEDTTGPEL 211          
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 76/212 (35.85%), Postives = 103/212 (48.58%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTQPTL 711
            R     S  VGVF+  T+ + LV     ES  S FE EL   +  V T+I G+  +G L VGN+NGLL     TD+E   L       VV   +   ++A GN +  N+  A  H DL R+    I + L V V R  +A    VG+    ++ G L HP T+ E LD L  L  V    GT+N G  ++G+GL  N+     G +TT P L
Sbjct:    3 RAALSGSSYVGVFATATDEYLLVRPDIEESLQSEFETELD--VTAVPTTIAGSGTVGSLAVGNENGLLVTERVTDRERDRLETETGLPVV--ELPGNINAAGNVVLANNEGAFVHPDLSRDALSAIEEALSVPVERGRIADVQTVGTAAVVTDDGVLSHPKTTDEKLDFLEELFGVYADIGTINYGGPLVGSGLVANNTGYIAGEETTGPEL 210          
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 75/204 (36.76%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNI-LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTQPTL 711
            +GV+    N   LV    +E      E  L   + V++T I    I G +  GN NGLL P     +EL +LR  + D+V ++ +E R +ALGN IA N+  AL    +D+   + I  VLGVE   Q    NI  VGS    +NRGG+VHP  S +++  L+++  V     TVN G   + AGL  ND  A  G +TT P L
Sbjct:   13 IGVYIYANNKIALVPPTLTEKDKKKIEETLG--VEVIETKIADMIINGVMIAGNDNGLLLPRIVKPEELDYLREHIGDKVRLEILEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGSMIVVTNRGGVVHPGVSDDEIRILNSVFGVEFTTATVNFGLYFVKAGLVANDHGALVGDETTGPEL 214          
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 68/199 (34.17%), Postives = 105/199 (52.76%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 699
            +GVF+  T    +V IG +         +L   + V+ T I G+ ++G L  GN NG L        +L+ +      +V V+ + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R T+AG   VG     +NRG LVHP  + ++L  L  +  +P+  GT N GS+ +G+GL  N      GS+TT
Sbjct:   13 LGVFATCTEDVAIVPIGTAGKAIDLLAEQLD--VKVISTLINGSIVVGSLSKGNSNGFLISRDANVSDLKDV------EVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVGMAGVVTNRGLLVHPMVTPDELSVLEDVFALPIELGTTNYGSQAVGSGLLANSKGYVAGSNTT 203          
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 72/215 (33.49%), Postives = 110/215 (51.16%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTQPTL 711
            M  R+    +  +GV+  +T++  L+     E F       L   + V+K SI G+ + G L VGN NG +  +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+A   L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +IGA    N      G +TT P L
Sbjct:    1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPEL 210          
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 73/212 (34.43%), Postives = 102/212 (48.11%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTQPTL 711
            R  F  S  VGVF++ T+   L+     +       AEL   IP V T+IGG+  +G L  GN+NG+L     T +E + +  +    V V  +  R++A GN I  ND+ A  H DL  E  E I   L V V R  +A    VG+    +NRG L HP     +L+ +   L V    GTVN G+ ++G+G+         G DTT P L
Sbjct:    3 RASFAGSPYVGVFARATDDVLLLRSDVDDDTADAMAAELD--IPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGTAAVATNRGVLCHPKAREPELEAIEDHLDVRADIGTVNYGAPLVGSGIVAGQTGYVVGEDTTGPEL 210          
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 67/205 (32.68%), Postives = 101/205 (49.27%), Query Frame = 1
Query:   85 FENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 699
            F     +GVF+++     ++     E F +     L   + ++ T+I G+ IIG L  GN  GL+     TD+EL  L+        V  + E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G    G     +N+G +VHP  + +++  L T+  +P+  GT+N GS ++G GL VND     G+ T+
Sbjct:    7 FAGDPNIGVFARVAGNIAVIPPEAPEEFRNAIREGLG--VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDEELAVLKKHRK----VMLLCETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGLLVNDTGYLAGNATS 205          
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 73/215 (33.95%), Postives = 114/215 (53.02%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTQPTL 711
            RL    +  +GV+    N + ++  G      S  +  +A V+   +++  I  + ++G    GN NG+L P +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE + R  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT P +
Sbjct:    5 RLSVFGTDNIGVYIYTNNKYTIIPRG----LDSETKENIAQVLGTELLEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEILNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVANDKGTLVGASTTGPEI 214          
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_SULIY (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 72/215 (33.49%), Postives = 113/215 (52.56%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTQPTL 711
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+L P +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT P +
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEI 214          
BLAST of FC930290 vs. ExPASy Swiss-Prot
Match: IF6_SULIN (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 72/215 (33.49%), Postives = 113/215 (52.56%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTQPTL 711
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+L P +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT P +
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEI 214          
The following BLAST results are available for this feature:
BLAST of FC930290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METKA1.259e-2537.65Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_NATPD4.785e-2535.85Translation initiation factor 6 OS=Natronomonas ph... [more]
IF6_HYPBU1.818e-2436.76Translation initiation factor 6 OS=Hyperthermus bu... [more]
IF6_METBU5.291e-2434.17Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_METTH9.025e-2433.49Translation initiation factor 6 OS=Methanobacteriu... [more]
IF6_HALWD2.011e-2334.43Translation initiation factor 6 OS=Haloquadratum w... [more]
IF6_METB63.429e-2332.68Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_SULSO7.640e-2333.95Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_SULIY9.978e-2333.49Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIN9.978e-2333.49Translation initiation factor 6 OS=Sulfolobus isla... [more]

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Properties
Property NameValue
Genbank descriptionC34005H04EF PostHarvC1 Citrus clementina cDNA clone C34005H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930290 ID=FC930290; Name=FC930290; organism=Citrus clementina; type=EST; length=717bp
GATCGCAGGTCTTGTGCTTTCATTCGGTCCATCTTTTAATCGGTTCAATT
CTGTTAATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTG
AGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATT
GGAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGT
TATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGC
TTTGTGTTGGTAACAAAAATGGGCTTCTCTCGCCACACACAACCACAGAC
CAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCA
GCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATG
ACCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATT
ATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAA
TATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCC
ACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAA
GTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGC
TGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGACACCACGC
AACCGACTCTCTGTTAT
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