FC930294

Overview
NameFC930294
Unique NameFC930294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD2_SCHPO (ER lumen protein retaining receptor OS=Schizosaccharomyces pombe GN=erd2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 49/148 (33.11%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  243 VAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVRLYCSFVMEYD--IHTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + + AH   I +L++++ K +TC+GLSLKS  L  +    R Y +    Y    + L     + +  ++ Y+M   LR +Y    D F   Y+L  CAVL+ LI+P+++   ++ I W F ++LE+V++LPQL ++Q +   E  TAH
Sbjct:    7 LGDMAHLAAIFLLLHRMKKSKTCSGLSLKSHLLFLLVYVTR-YLNLFWRYKSLYYFLMRIVFIASESYICYLMLMTLRPTYDKRLDTFRTEYILGGCAVLA-LIYPTSY--TISNILWTFSIWLESVAILPQLFMLQRSGETESLTAH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD23_MOUSE (ER lumen protein retaining receptor 3 OS=Mus musculus GN=Kdelr3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 45/150 (30.00%), Postives = 85/150 (56.67%), Query Frame = 3
Query:  240 VVAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            ++ + +H + + +L+ K+ + ++CAG+S KSQ L A+    R   L+ +F+  Y+  T+     L+     +YM+ +K R ++  + D F + ++L+P   LSFL++ S   +    + W F +YLE+V++LPQL ++  T   E  T H
Sbjct:    6 ILGDLSHLLAMILLLVKIWRSKSCAGISGKSQILFALVFTTRYLDLFSNFISIYN--TVMKVVFLLCAYVTVYMIYWKFRKTFDIENDTFRLEFLLVPVTGLSFLVNYS---YTPMEVLWTFSIYLESVAILPQLFMISKTGEAETITTH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD2_ARATH (ER lumen protein retaining receptor OS=Arabidopsis thaliana GN=ERD2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 48/147 (32.65%), Postives = 84/147 (57.14%), Query Frame = 3
Query:  249 EAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFK--LRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFT 674
            + +H I + +L+ K+   ++CAG+SLK+QEL A+    R   L+  +V  Y+  ++     + ++L +++ MR    +R SY  D D F   YV++ C VL  +++       V  + WAF +YLEAV++LPQL ++Q +  V+  T
Sbjct:    9 DMSHLISVLILLLKIYATKSCAGISLKTQELYALVFLTRYLDLFTDYVSLYN--SIMKIVFIASSLAIVWCMRRHPLVRRSYDKDLDTFRHQYVVLACFVLGLILNEK---FTVQEVFWAFSIYLEAVAILPQLVLLQRSGNVDNLT 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD2_PETHY (ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 46/150 (30.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  240 VVAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFK--LRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFT 674
            +  +  H   + VL+ K+   ++CAG+SLK+QEL A+    R   ++  F+  Y+  T      L ++L +++ MR    +R SY  D+D F   ++++PC +L+ +I+          + W F +YLEAV++LPQL ++Q T+ ++  T
Sbjct:    6 LAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFVTRYLDIFTDFISLYN--TTMKLVFLGSSLSIVWYMRHHKIVRRSYDKDQDTFRHLFLVLPCLLLALVINEK---FTFKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLT 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD2_DICDI (ER lumen protein retaining receptor OS=Dictyostelium discoideum GN=kdelr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 45/152 (29.61%), Postives = 84/152 (55.26%), Query Frame = 3
Query:  243 VAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVN---RISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + +  H   + +L++K+  +++CAG+SLKSQ L  I    R   L+ ++V  Y   T      +  + + ++++  K + +Y  D D F I Y++  CA+LS + +  T   + +    I W F +YLE++++LPQL ++Q T  VE  T++
Sbjct:    7 LGDMLHLGSMLILLFKIKNDKSCAGVSLKSQILFTIVFTARYLDLFTNYVSLYI--TFMKITYIAVSYYTLHLIARKYKFTYDKDHDTFKIVYLIASCAILSLITYDKTTIGIYSTFLEILWTFSIYLESIAILPQLILLQRTGEVEALTSN 156          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD2_PLAFA (ER lumen protein retaining receptor OS=Plasmodium falciparum GN=ERD2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 53/153 (34.64%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  240 VVAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRAS--YMDDKDNF-AIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            ++ +  H + + +LI KL K + C G+S + QEL  I    R   L+  FV  Y+  T+     ++T  + IY++R KL  S  Y    DNF +  Y++ PC VLS L   +  ++L N I W+F ++LE+V++LPQL +++  + VE  T+H
Sbjct:    6 LIGDILHLVSMYILIMKLKKSKNCIGISCRMQELYLIVFLCRYIDLFFVFVSFYN--TVMKITFILTIAYTIYLIRLKLPISQTYNRKVDNFKSEKYLIPPCLVLSLLTCKT--YNLYN-ILWSFSIWLESVAILPQLVLLEKQREVENITSH 153          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD2_PLAF7 (ER lumen protein retaining receptor OS=Plasmodium falciparum (isolate 3D7) GN=ERD2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 53/153 (34.64%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  240 VVAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRAS--YMDDKDNF-AIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            ++ +  H + + +LI KL K + C G+S + QEL  I    R   L+  FV  Y+  T+     ++T  + IY++R KL  S  Y    DNF +  Y++ PC VLS L   +  ++L N I W+F ++LE+V++LPQL +++  + VE  T+H
Sbjct:    6 LIGDILHLVSMYILIMKLKKSKNCIGISCRMQELYLIVFLCRYIDLFFVFVSFYN--TVMKITFILTIAYTIYLIRLKLPISQTYNRKVDNFKSEKYLIPPCLVLSLLTCKT--YNLYN-ILWSFSIWLESVAILPQLVLLEKQREVENITSH 153          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD22_DANRE (ER lumen protein retaining receptor 2 OS=Danio rerio GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 48/150 (32.00%), Postives = 78/150 (52.00%), Query Frame = 3
Query:  240 VVAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            +  + +H   I +L+ K+ K R+CAG+S KSQ L A+    R   L  SF+  Y+  T      +      +Y++  K RA+Y  + D F   ++++P   L+FL++   H      I W F +YLE+V++LPQL ++  T   E  T H
Sbjct:    6 LTGDLSHLAAIIILLLKIWKSRSCAGISGKSQILFALVFTTRYLDLLTSFISLYN--TCMKVIYIGCAYATVYLIYAKFRATYDGNHDTFRAEFLVVPVGGLAFLVN---HDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD22_XENTR (ER lumen protein retaining receptor 2 OS=Xenopus tropicalis GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  249 EAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + +H   I +L+ K+ K R+CAG+S KSQ L A+    R   L  SF+  Y+  T      +      +Y++  K +A+Y  + D F + ++++P   LS L++   H      I W F +YLE+V++LPQL ++  T   E  T H
Sbjct:    9 DLSHLAAIIILLLKIWKSRSCAGISGKSQLLFALVFTTRYLDLLTSFISLYN--TSMKVIYIGCAYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSVLVN---HDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD23_HUMAN (ER lumen protein retaining receptor 3 OS=Homo sapiens GN=KDELR3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 44/150 (29.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  240 VVAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            ++ + +H + + +L+ K+ + + C G+S KSQ L A+    R   L+ +F+  Y+  T+     L+     +YM+  K R ++  + D F + ++L+P   LSFL     +   +  I W F +YLE+V++LPQL ++  T   E  T H
Sbjct:    6 ILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN--TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFL---ENYSFTLLEILWTFSIYLESVAILPQLFMISKTGEAETITTH 150          
The following BLAST results are available for this feature:
BLAST of FC930294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ERD2_SCHPO2.389e-1533.11ER lumen protein retaining receptor OS=Schizosacch... [more]
ERD23_MOUSE2.389e-1530.00ER lumen protein retaining receptor 3 OS=Mus muscu... [more]
ERD2_ARATH4.075e-1532.65ER lumen protein retaining receptor OS=Arabidopsis... [more]
ERD2_PETHY5.323e-1530.67ER lumen protein retaining receptor OS=Petunia hyb... [more]
ERD2_DICDI5.323e-1529.61ER lumen protein retaining receptor OS=Dictyosteli... [more]
ERD2_PLAFA2.023e-1434.64ER lumen protein retaining receptor OS=Plasmodium ... [more]
ERD2_PLAF72.023e-1434.64ER lumen protein retaining receptor OS=Plasmodium ... [more]
ERD22_DANRE2.642e-1432.00ER lumen protein retaining receptor 2 OS=Danio rer... [more]
ERD22_XENTR5.885e-1431.97ER lumen protein retaining receptor 2 OS=Xenopus t... [more]
ERD23_HUMAN1.311e-1329.33ER lumen protein retaining receptor 3 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC34005H08EF PostHarvC1 Citrus clementina cDNA clone C34005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930294 ID=FC930294; Name=FC930294; organism=Citrus clementina; type=EST; length=681bp
GATTAAGATTATTTTCTTCTCCTATTATCTTTCCCTTAAAAACCTCCAAC
GAAACTGTAGTGTGTCCACTAGGAGTAACAAATAATAATCAAATGAAGGG
TTATAAGACGCCGATCCACGCGGCGGCGACGTGGGTTCGCCGGCAGCCTC
CGAAGATTAAGATATTTTTGGCGGTAATCACGGCCTTAGCAGCTTTAGTT
TTTCTAAGAATGGTGGTCGAAGATCACGACAGCCTTTTTGTTGTTGCCGA
GGCCGCTCACGCTATTGGAATCTCCGTTCTCATTTACAAGCTCACTAAGG
AGAGAACTTGTGCTGGATTGTCACTTAAATCTCAGGAACTAACGGCCATC
TTTTTAGCTGTTAGGCTCTATTGCAGTTTTGTAATGGAATATGATATACA
TACGCTACCTGATTCAGCTACATTGGTGACAACCCTTTGGGTTATTTATA
TGATGCGTTTTAAATTGAGGGCCAGTTACATGGATGATAAAGACAACTTT
GCTATTTACTATGTTTTGATACCTTGTGCTGTTCTATCTTTTCTCATTCA
TCCATCAACCCATCATCATTTAGTTAATCGGATTTCTTGGGCTTTCTGTG
TCTATCTTGAAGCCGTTTCAGTCTTACCCCAGCTACGAGTCATGCAGAAC
ACAAAGATTGTTGAACCATTCACGGCACATT
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