FC930295

Overview
NameFC930295
Unique NameFC930295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METBF (Translation initiation factor 6 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=eif6 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.097e-25
Identity = 69/201 (34.33%), Postives = 105/201 (52.24%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705
            +GVF+  T    LV  G      +  E  L     +V+T + G+ +IG L  GN NG L  + T   E++ L       V  + +  +L+A+GN +  ND  AL H +L  +  E+IA  L VEV+R T+AG   VG     +N+G LVHP  +  +++ L  L ++P+  GT N G++++G+GL  N      GSDT  P
Sbjct:   13 IGVFATCTEDVVLVPTGTKPETCAILEDSLD--ARIVETLVNGSVVIGALSRGNSNGFLYSYGTDAGEMKELTG-----VEAEILPGKLNAVGNIVLANDSAALVHPELSDKAIEVIASTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEIETLEKLFELPVNIGTTNFGTQMLGSGLLANSKNYLAGSDTTGP 206          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.356e-24
Identity = 74/210 (35.24%), Postives = 102/210 (48.57%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705
            R     S  VGVF+  T+ + LV     ES  S FE EL   +  V T+I G+  +G L VGN+NGLL+    TD+E   L       VV   +   ++A GN +  N+  A  H DL R+    I + L V V R  +A    VG+    ++ G L HP T+ E LD L  L  V    GT+N G  ++G+GL  N+     G +T  P
Sbjct:    3 RAALSGSSYVGVFATATDEYLLVRPDIEESLQSEFETELD--VTAVPTTIAGSGTVGSLAVGNENGLLVTERVTDRERDRLETETGLPVV--ELPGNINAAGNVVLANNEGAFVHPDLSRDALSAIEEALSVPVERGRIADVQTVGTAAVVTDDGVLSHPKTTDEKLDFLEELFGVYADIGTINYGGPLVGSGLVANNTGYIAGEETTGP 208          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24
Identity = 74/202 (36.63%), Postives = 103/202 (50.99%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNI-LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705
            +GV+    N   LV    +E      E  L   + V++T I    I G +  GN NGLLLP     +EL +LR  + D+V ++ +E R +ALGN IA N+  AL    +D+   + I  VLGVE   Q    NI  VGS    +NRGG+VHP  S +++  L+++  V     TVN G   + AGL  ND  A  G +T  P
Sbjct:   13 IGVYIYANNKIALVPPTLTEKDKKKIEETLG--VEVIETKIADMIINGVMIAGNDNGLLLPRIVKPEELDYLREHIGDKVRLEILEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGSMIVVTNRGGVVHPGVSDDEIRILNSVFGVEFTTATVNFGLYFVKAGLVANDHGALVGDETTGP 212          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 67/198 (33.84%), Postives = 105/198 (53.03%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696
            +GVF+  T    +V IG +         +L   + V+ T I G+ ++G L  GN NG L+       +L+ +      +V V+ + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R T+AG   VG     +NRG LVHP  + ++L  L  +  +P+  GT N GS+ +G+GL  N      GS+T
Sbjct:   13 LGVFATCTEDVAIVPIGTAGKAIDLLAEQLD--VKVISTLINGSIVVGSLSKGNSNGFLISRDANVSDLKDV------EVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVGMAGVVTNRGLLVHPMVTPDELSVLEDVFALPIELGTTNYGSQAVGSGLLANSKGYVAGSNT 202          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 67/204 (32.84%), Postives = 101/204 (49.51%), Query Frame = 1
Query:   85 FENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696
            F     +GVF+++     ++     E F +     L   + ++ T+I G+ IIG L  GN  GL++    TD+EL  L+        V  + E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G    G     +N+G +VHP  + +++  L T+  +P+  GT+N GS ++G GL VND     G+ T
Sbjct:    7 FAGDPNIGVFARVAGNIAVIPPEAPEEFRNAIREGLG--VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDEELAVLKKHRK----VMLLCETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGLLVNDTGYLAGNAT 204          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 70/213 (32.86%), Postives = 109/213 (51.17%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705
            M  R+    +  +GV+  +T++  L+     E F       L   + V+K SI G+ + G L VGN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+A   L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +IGA    N      G +T  P
Sbjct:    1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGP 208          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714
            RL    +  +GV+    N + ++  G      S  +  +A V+   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE + R  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ T  P  L
Sbjct:    5 RLSVFGTDNIGVYIYTNNKYTIIPRG----LDSETKENIAQVLGTELLEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEILNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVANDKGTLVGASTTGPEIL 215          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_SULIY (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 73/216 (33.80%), Postives = 113/216 (52.31%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ T  P  L
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEIL 215          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_SULIN (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 73/216 (33.80%), Postives = 113/216 (52.31%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ T  P  L
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEIL 215          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_SULIL (Translation initiation factor 6 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 73/216 (33.80%), Postives = 113/216 (52.31%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ T  P  L
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEIL 215          
The following BLAST results are available for this feature:
BLAST of FC930295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METBF8.097e-2534.33Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_NATPD2.356e-2435.24Translation initiation factor 6 OS=Natronomonas ph... [more]
IF6_HYPBU4.019e-2436.63Translation initiation factor 6 OS=Hyperthermus bu... [more]
IF6_METBU6.855e-2433.84Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_METB61.994e-2332.84Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_METTH4.443e-2332.86Translation initiation factor 6 OS=Methanobacteriu... [more]
IF6_SULSO5.803e-2334.26Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_SULIY7.579e-2333.80Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIN7.579e-2333.80Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIL7.579e-2333.80Translation initiation factor 6 OS=Sulfolobus isla... [more]

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Properties
Property NameValue
Genbank descriptionC34005H09EF PostHarvC1 Citrus clementina cDNA clone C34005H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930295 ID=FC930295; Name=FC930295; organism=Citrus clementina; type=EST; length=714bp
GATCGCAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATT
CTGTTAATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTG
AGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATT
GGAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGT
TATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGC
TTTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGAC
CAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCA
GCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATG
ACCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATT
ATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAA
TATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCC
ACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAA
GTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGC
TGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGACACACGGC
AACCGAACTCTCTG
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