FC930295

Overview
NameFC930295
Unique NameFC930295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  478 FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696
            FR ++A N LVGSY   +N+G +VHP T  +D+DE+++LLQVP+VAGT+NRG+  IG+GL VNDW AFCG +T
Sbjct:    4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVNDWAAFCGLNT 76          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 60/198 (30.30%), Postives = 95/198 (47.98%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696
            +GV+    + F L+     E         L+  +   + S+ G R++G    GN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +A   L +   + IAD LGVE  + ++     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N   A  G DT
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVGEDT 209          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 60/198 (30.30%), Postives = 102/198 (51.52%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696
            +GVF+++ +   +V     E   + +E  L   + +V+T+I  + IIG L VGN NGL++    T++E+     +L +   +  +EE ++A GN I  NDH A  H ++D E  + ++D L V V   T+     VG     +N G +V P T+  ++  L  +  +P+  GTV  G+ ++G GL  N +    G  T
Sbjct:   13 IGVFTRVFDDIAVVPPDVPEEVTTRYEEALK--VEIVRTTIQRSPIIGSLLVGNNNGLVITGMATEEEIA----TLSEYRDLMLLEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVANRYGYLAGVGT 204          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  217 TSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705
            TS+   R++G L V N +G+++P T ++ E +  +      VVV  ++ + +ALGN I+ ND   +      RE   IIAD LG+EV ++ +AG   VG+    ++ GG++HP T  ED+  +S ++ V +   T+N G   + +GL  N  +   GS T  P
Sbjct:   50 TSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAGSFTSGP 210          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 60/166 (36.14%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705
            V + ++  + ++G   V N NG+LLP    ++E++ L  +L   V +  I  + +A+ N I   + VAL    L+    +++ADVLGVEV   T+AGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+ VND  A  G +T  P
Sbjct:   48 VARFTVARSPLLGIFTVVNDNGVLLPPLVLEEEVR-LFKALGLNVDI--INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVNDNGALVGDETAGP 210          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 65/210 (30.95%), Postives = 98/210 (46.67%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705
            R  F  S  VGVF++  +   LV     E        EL      + T++GG   +G L  GN+NG+L+    T++E   +  +   +V    +   ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +IG+GL   D     G DT  P
Sbjct:    3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEELG--AEPLLTTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATDEGYVVGEDTTGP 208          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 59/166 (35.54%), Postives = 91/166 (54.82%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705
            V + ++  + ++G   V N NG+LLP    ++E++ L  +L   V V  +  + +A+ N I   + VAL    L+    +++ADVLGVEV   T+AGN LVGS    ++RG LV P  + EDL +L+   +     GTVN+G   +  G+ VND  A  G +T  P
Sbjct:   48 VARLTVAKSPLLGIFTVVNDNGVLLPPMVLEEEIR-LFKALGLNVEV--LNTKYTAISNLILAGNKVALVSPLLEPSVRKVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVNDHGALVGDETAGP 210          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 68/216 (31.48%), Postives = 105/216 (48.61%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714
            RL    +  +GV+    N+  LV    S        AE  DV  +V+T I    + G L VGN NG++LP    D+EL  L N+L      + V R +   +ALGN + CN+   +A ++L+R+    I++ LGVE   + +    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +GL  N+     G  T  P  L
Sbjct:    5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANNKGIIVGEYTTGPEIL 216          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 61/212 (28.77%), Postives = 105/212 (49.53%), Query Frame = 1
Query:   61 VIMATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696
            VI  T +M   S  +G+++K  +    +     E   + F   L   + + + SI G+ +IG +   N NG++LP+ +    L  +     D   V  ++++++A+GN I  NDH A+ H     +  + I D LGVE  R ++   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA +  N      G DT
Sbjct:    3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVANSKGILVGRDT 205          
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 64/198 (32.32%), Postives = 98/198 (49.49%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696
            +GV++++     +V  G    F +    EL   + +V T I G+ IIG L  GN  GL++    TD+EL      L +   V  ++  ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++G GL  N      GS T
Sbjct:   13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLANSKGYVAGSVT 204          
The following BLAST results are available for this feature:
BLAST of FC930295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_TRYCR3.520e-2058.90Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_THEPD4.598e-2030.30Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_METHJ4.598e-2030.30Translation initiation factor 6 OS=Methanospirillu... [more]
IF6_CENSY4.598e-2033.13Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_PYRAE6.005e-2036.14Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_HALLT6.005e-2030.95Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_PYRAR7.843e-2035.54Translation initiation factor 6 OS=Pyrobaculum ars... [more]
IF6_STAMF1.024e-1931.48Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_THEVO2.980e-1928.77Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_METMJ2.980e-1932.32Translation initiation factor 6 OS=Methanoculleus ... [more]

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Properties
Property NameValue
Genbank descriptionC34005H09EF PostHarvC1 Citrus clementina cDNA clone C34005H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930295 ID=FC930295; Name=FC930295; organism=Citrus clementina; type=EST; length=714bp
GATCGCAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATT
CTGTTAATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTG
AGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATT
GGAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGT
TATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGC
TTTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGAC
CAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCA
GCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATG
ACCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATT
ATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAA
TATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCC
ACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAA
GTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGC
TGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGACACACGGC
AACCGAACTCTCTG
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