FC930295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17 Identity = 62/175 (35.43%), Postives = 94/175 (53.71%), Query Frame = 1 Query: 202 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714 IP + +I + +IG LCVGN NGLL+P TT++E++ ++ L + V ++R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N A G DT P L Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANIKGAVVGGDTSGPEIL 217
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17 Identity = 62/213 (29.11%), Postives = 106/213 (49.77%), Query Frame = 1 Query: 67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696 M L +GV++++ +V + + F AE DV V++T + G+ +IG L GN G ++ D EL+ L+ D ++ + E ++A GN I ND A+ H D+ E++AD L V++ + AG VG C+ +N G L+ ++ E++++L + V + G+VN GS +IG GL +N G+ T Sbjct: 1 MDPTLSLNGDPNIGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLINSKGYLAGNAT 207
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METS3 (Translation initiation factor 6 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eif6 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14 Identity = 57/213 (26.76%), Postives = 98/213 (46.01%), Query Frame = 1 Query: 67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705 M R+ ++ +GVF T+ +V + E L + VK+SI G +IG L V N NG+++ D+E++ + V I +A+GN +A ND A+ L E ++I D L V V ++ G+ ++GS + +N+G L+ + + ++D + V GTV RG ++GA N A ++ P Sbjct: 1 MLRRINIVDNPNIGVFILATDDLAVVPYNLLDEKVKLIEETLE--VDAVKSSISGCNLIGSLAVANSNGIVVSPHVLDREVKQFEEL---GLNVATIPGNYTAVGNIVAANDTGAIVSPFLSDEAVKVIEDTLDVNVESTSMVGSDIIGSLITVTNKGFLMDKNATETEVDFARDVFGVEGDIGTVGRGISLVGACSLANSSGAIVAKESTGP 208 The following BLAST results are available for this feature:
BLAST of FC930295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930295 ID=FC930295; Name=FC930295; organism=Citrus clementina; type=EST; length=714bpback to top |