FC930307

Overview
NameFC930307
Unique NameFC930307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.078e-61
Identity = 113/148 (76.35%), Postives = 132/148 (89.19%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            IA+DVT+LIG TP+VYLN + +GCV  +AAKLE+MEPC SVKDRIGFSMI+DAE+KGLI PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS ERR++L AFG ELVLTD AKGMKGA+ KAEEIL  TPN YMLQQF+NPA
Sbjct:    5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPA 152          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.348e-61
Identity = 111/152 (73.03%), Postives = 135/152 (88.82%), Query Frame = 2
Query:  254 EGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            E + IA+DVT+LIG TP+VYLN +V GCVA +AAKLE MEPC SVKDRIG+SMI DAE+KGLI PG+S+L+EPTSGNTG+GLAF+AA+KGYKLI+TMP+SMSLERR++L+ F +ELVLTD AKGMKGA+ KAEEI   TPN+Y+LQQF+NPA
Sbjct:    4 EKIGIAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELVLTDPAKGMKGAISKAEEIKAKTPNSYILQQFENPA 155          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.556e-60
Identity = 111/151 (73.51%), Postives = 133/151 (88.08%), Query Frame = 2
Query:  257 GLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            G  IA+DVT+LIG TP+VYLN +  GCV  +AAKLE MEPC SVKDRIG+SMI DAE+KGLITPGKS+L+EPTSGNTGIGLAF+AA+KGY+L+LTMPASMS+ERR++LKAFGAEL+LTD   GMKGAVQKAEE+   T N+++LQQF+NPA
Sbjct:    2 GETIAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTNNSFILQQFENPA 152          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.009e-59
Identity = 109/148 (73.65%), Postives = 130/148 (87.84%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            IA+DVT+LIG TP+VYLN +  GCV  +AAKLE MEPC SVKDRIG+SMI DAE+KG I PGKS+L+EPTSGNTGIGLAF+AA+KGY+L+LTMPASMS+ERR++LKAFGAEL+LTD   GMKGAVQKAEE+   TPN+Y+LQQF+N A
Sbjct:    9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTPNSYILQQFENAA 156          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.720e-59
Identity = 112/149 (75.17%), Postives = 130/149 (87.25%), Query Frame = 2
Query:  263 NIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +IA+DVT+LIG TP+VYLN +  GCV    AKLE MEPC SVKDRIG+SMI DAE+KGLITPG S+L+EPTSGNTGIGLAF+AA+KGYKL LTMPASMS+ERR++LKAFGAELVLTD   GMKGAV+KAEEI   TPN+Y+LQQF+NPA
Sbjct:    7 SIAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELVLTDPLLGMKGAVKKAEEIQAKTPNSYILQQFENPA 155          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK4_ARATH (Probable cysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.037e-56
Identity = 107/152 (70.39%), Postives = 130/152 (85.53%), Query Frame = 2
Query:  254 EGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            E +NIAEDVTQLIG TPMVYLN +  GC+A+IAAKLE MEPC SVKDRIG SMI +AE  G ITP K++LVEPT+GNTG+G+AF+AA+KGYKLI+TMPAS+++ERR+LL+A GAE+VLT+  KG+KGAV KA+EI+  T NAYM QQFDN A
Sbjct:   95 ETVNIAEDVTQLIGSTPMVYLNRVTDGCLADIAAKLESMEPCRSVKDRIGLSMINEAENSGAITPRKTVLVEPTTGNTGLGIAFVAAAKGYKLIVTMPASINIERRMLLRALGAEIVLTNPEKGLKGAVDKAKEIVLKTKNAYMFQQFDNTA 246          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.511e-47
Identity = 94/152 (61.84%), Postives = 121/152 (79.61%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTI--VKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            + IA ++T+LIG+TP+V LN I  ++GC A I  KLE M P  SVKDRIG +MI  AEQ+GLI PGK++L+EPTSGNTGI LA +AA+KGY+LILTMP +MS ERR +LKA+GA+L LT  ++GM G +++A+E+  S PNAYMLQQFDNPA
Sbjct:    1 MKIASNITELIGRTPLVRLNRIPLLEGCGAKIVVKLEGMNPAASVKDRIGINMINRAEQEGLIEPGKTLLIEPTSGNTGIALAMVAAAKGYQLILTMPETMSQERRAMLKAYGAKLELTPGSEGMGGCIRRAQELAESLPNAYMLQQFDNPA 152          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 86/150 (57.33%), Postives = 114/150 (76.00%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            ++IAED+TQLIG+TP+V L  +  G VA+I AKLE   P  SVKDRIG +M+  AEQ GLI P  +I++EPTSGNTGI LA + A++GY+ +LTMP +MSLERR+LL+A+GAEL+LT  A GM GA+ KAEE+  +    ++ QQF+NPA
Sbjct:    1 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPA 149          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 86/150 (57.33%), Postives = 114/150 (76.00%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            ++IAED+TQLIG+TP+V L  +  G VA+I AKLE   P  SVKDRIG +M+  AEQ GLI P  +I++EPTSGNTGI LA + A++GY+ +LTMP +MSLERR+LL+A+GAEL+LT  A GM GA+ KAEE+  +    ++ QQF+NPA
Sbjct:    1 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPA 149          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.618e-41
Identity = 83/150 (55.33%), Postives = 113/150 (75.33%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            ++IAEDVTQL+G TP+V L  + +G +A++ AKLE   P  SVKDRIG +MI  AE+ GLI P  ++++EPTSGNTGI LA + A++GY  +LTMP +MS+ERR+LL+A+GAEL+LT  A GM GA+ KAEE+  S    ++ QQF+NPA
Sbjct:    1 MSIAEDVTQLVGNTPLVRLRRVTEGALADVVAKLESFNPANSVKDRIGVAMIDTAEEAGLIKPD-TVILEPTSGNTGIALAMVCAARGYHCVLTMPETMSIERRMLLRAYGAELILTPGADGMSGAIAKAEELAKSDKRYFIPQQFENPA 149          
The following BLAST results are available for this feature:
BLAST of FC930307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK1_ARATH1.078e-6176.35Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK_SOLTU5.348e-6173.03Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK1_ORYSJ1.556e-6073.51Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_WHEAT1.009e-5973.65Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK_MAIZE1.720e-5975.17Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK4_ARATH3.037e-5670.39Probable cysteine synthase, chloroplastic OS=Arabi... [more]
CYSK_SYNY31.511e-4761.84Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]
CYSK_MYCTU1.120e-4257.33Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO1.120e-4257.33Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]
CYSK_MYCLE1.618e-4155.33Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]

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Properties
Property NameValue
Genbank descriptionC34006A10EF PostHarvC1 Citrus clementina cDNA clone C34006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930307 ID=FC930307; Name=FC930307; organism=Citrus clementina; type=EST; length=710bp
GACATCAGTTGGTCATCACAGTTAGTTCCCACAAAGTTCCAAAACAATGG
TCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGCTCCTCTCTGCATC
TCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCCCAT
AACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACAAAC
CCTGCAACTCTGTTGTGTGCAAGGCCGTCTCTGTGAAGCCGCAGACTGGG
ATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAAGAC
GCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACATTG
CTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGGATA
GGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCCTGG
AAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCCTTG
CTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCAGCC
TCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGAGCT
TGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCTGTCCAGAAAGCTG
AAGAAATTTTGAATAGCACACCTAATGCATATATGCTTCAGCAATTTGAC
AATCCTGCTA
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