FC930307

Overview
NameFC930307
Unique NameFC930307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.028e-41
Identity = 91/146 (62.33%), Postives = 111/146 (76.03%), Query Frame = 2
Query:  275 DVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 709
            D +Q IGKTP+V LN IVKG  A + AK+E   P  SVK RIG +MI DAEQ+GL+ PGK  L+EPTSGNTGI LAF+AA++G  L LTMP +MSLERR LL A+GA+LVLT+  KGM GAV++AE+I  S P+ Y +LQQF NPA
Sbjct:   10 DNSQTIGKTPLVRLNRIVKGAPATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLLGPGKE-LIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLVLTEGVKGMTGAVRRAEDIAASDPDRYVLLQQFRNPA 154          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.514e-39
Identity = 92/149 (61.74%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 709
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKGMKGA+QKAEEI+ S P  Y +LQQF NPA
Sbjct:    4 IFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPA 148          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.514e-39
Identity = 92/149 (61.74%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 709
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKGMKGA+QKAEEI+ S P  Y +LQQF NPA
Sbjct:    4 IFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPA 148          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 92/149 (61.74%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 709
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKGMKGA+QKAEEI+ S P  Y +LQQF NPA
Sbjct:    4 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPA 148          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 92/149 (61.74%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 709
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKGMKGA+QKAEEI+ S P  Y +LQQF NPA
Sbjct:    4 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPA 148          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37
Identity = 79/151 (52.32%), Postives = 110/151 (72.85%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 709
            + IA  +T+LIG TP+V LN + +G  A +A KLE   P  SVKDRI  +MI  AE+ G I    +++VE TSGNTG+GLA + A++GYKL +TMP SMS ER++LL+AFGAEL+LT +A+GM GA+ KA+ ++++ P+ Y M +QFDN A
Sbjct:    1 MKIANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVKDRIAEAMIEGAEKAGKINKN-TVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKERKMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNEA 150          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 77/148 (52.03%), Postives = 109/148 (73.65%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            I + +T+L+G+TP++ LN ++    A++  KLE   P  SVKDRI  SMI  AE +GLI+PG  +++EPTSGNTGIGLA++ A+KGY++I+ MP +MSLERR +++A+GAELVLT  A+GMKGA+ K E +      A+M  QF+NPA
Sbjct:    4 IYKTITELVGQTPIIKLNRLIPNEAADVYVKLEAFNPGSSVKDRIALSMIEAAEAEGLISPG-DVIIEPTSGNTGIGLAWVGAAKGYRVIIVMPETMSLERRQIIQAYGAELVLTPGAEGMKGAIAKTETLAIEL-GAWMPMQFNNPA 149          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.673e-36
Identity = 82/150 (54.67%), Postives = 109/150 (72.67%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            + +A  +T+LIG TP+V LN +     A++  KLE M P  SVKDRIG +MI  AE++G +  G +I +EPTSGNTGIGLA +AA+KG K IL MP +MS+ERR LL+A+GAELVLT  A+GMKGA++KAEE L      ++ QQF+NP+
Sbjct:    2 VRVANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSVKDRIGLAMIEAAEKEGKLKAGNTI-IEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSMERRNLLRAYGAELVLTPGAEGMKGAIKKAEE-LAEKHGYFVPQQFNNPS 149          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_STAES (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.954e-36
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 2
Query:  278 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            VTQ+IG TP+V L  +V    A+I  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E L      +  QQF+NPA
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_STAEQ (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.954e-36
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 2
Query:  278 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            VTQ+IG TP+V L  +V    A+I  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E L      +  QQF+NPA
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
The following BLAST results are available for this feature:
BLAST of FC930307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SRPG_SYNE78.028e-4162.33Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_ECOLI1.514e-3961.74Cysteine synthase A OS=Escherichia coli (strain K1... [more]
CYSK_ECO571.514e-3961.74Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]
CYSK_SALTY1.977e-3961.74Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI1.977e-3961.74Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSK_NEIMB5.385e-3752.32Cysteine synthase OS=Neisseria meningitidis serogr... [more]
CYSK_STRP61.567e-3652.03Cysteine synthase OS=Streptococcus pyogenes seroty... [more]
CYSK_BACSU2.673e-3654.67Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]
CYSK_STAES5.954e-3657.64Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAEQ5.954e-3657.64Cysteine synthase OS=Staphylococcus epidermidis (s... [more]

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Properties
Property NameValue
Genbank descriptionC34006A10EF PostHarvC1 Citrus clementina cDNA clone C34006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930307 ID=FC930307; Name=FC930307; organism=Citrus clementina; type=EST; length=710bp
GACATCAGTTGGTCATCACAGTTAGTTCCCACAAAGTTCCAAAACAATGG
TCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGCTCCTCTCTGCATC
TCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCCCAT
AACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACAAAC
CCTGCAACTCTGTTGTGTGCAAGGCCGTCTCTGTGAAGCCGCAGACTGGG
ATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAAGAC
GCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACATTG
CTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGGATA
GGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCCTGG
AAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCCTTG
CTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCAGCC
TCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGAGCT
TGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCTGTCCAGAAAGCTG
AAGAAATTTTGAATAGCACACCTAATGCATATATGCTTCAGCAATTTGAC
AATCCTGCTA
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