FC930307

Overview
NameFC930307
Unique NameFC930307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:9..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAW (Cysteine synthase OS=Staphylococcus aureus (strain MW2) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +++TQ+IG TP+V L  +V    A++  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E L      +  QQF+NPA
Sbjct:    7 DNITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAS (Cysteine synthase OS=Staphylococcus aureus (strain MSSA476) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +++TQ+IG TP+V L  +V    A++  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E L      +  QQF+NPA
Sbjct:    7 DNITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAR (Cysteine synthase OS=Staphylococcus aureus (strain MRSA252) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +++TQ+IG TP+V L  +V    A++  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E L      +  QQF+NPA
Sbjct:    7 DNITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAN (Cysteine synthase OS=Staphylococcus aureus (strain N315) GN=cysK PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +++TQ+IG TP+V L  +V    A++  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E L      +  QQF+NPA
Sbjct:    7 DNITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAM (Cysteine synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cysK PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +++TQ+IG TP+V L  +V    A++  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E L      +  QQF+NPA
Sbjct:    7 DNITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAC (Cysteine synthase OS=Staphylococcus aureus (strain COL) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +++TQ+IG TP+V L  +V    A++  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E L      +  QQF+NPA
Sbjct:    7 DNITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 79/146 (54.11%), Postives = 103/146 (70.55%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            ++  + IG TP+V +N +       I  KLE   P  S+KDRI  +MI DAE KGL+    +I +EPTSGNTGIGLA +AA KGYKLIL MP SMS+ERR +++A+GAE VLT   KGMKGA++KA E+   TPN+++ +QFDNPA
Sbjct:    4 QNALETIGNTPVVKINNLFNSD-HEIWIKLEKSNPGGSIKDRIALAMIEDAEAKGLLNKDSTI-IEPTSGNTGIGLALVAAVKGYKLILVMPESMSIERRKIMEAYGAEFVLTPREKGMKGAIEKANELAEETPNSWIPRQFDNPA 147          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.598e-35
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            L I  +   LIG TP+V LN +     A +  KLE   P  SVKDR  + MI +AEQ GL+ PG S+++EPTSGNTGIGLA  AA++GYK IL MP +M+ ER  LLKA+GAE+VLT   + M G+++KA+E+    PN+Y+  QFDN A
Sbjct:    2 LKIVANTADLIGDTPLVRLNRLQPENAAQVYLKLEFFNPSGSVKDRAAYQMIIEAEQNGLLKPG-SVIIEPTSGNTGIGLAMNAAARGYKAILVMPDTMTKERINLLKAYGAEVVLTPGEERMPGSIKKAKELAEQIPNSYIPMQFDNTA 150          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_HAEIN (Cysteine synthase OS=Haemophilus influenzae GN=cysK PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.373e-32
Identity = 80/149 (53.69%), Postives = 102/149 (68.46%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 709
            I  D +  IG TP+V L     G   N+  K+E   P  SVK RIG +M+  AE+ G +T GK I V+ TSGNTGI LA++AA++GYK+ LTMP +MSLER+ LL   G  LVLT+ AKGMKGA+ KAEEI+ S P+ Y ML+QF+NPA
Sbjct:    3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPA 148          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31
Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 709
            I ED +  IG TP+V LN I  G   NI AK+E   P  SVK RIG +MI DAE+KG +     I +E TSGNTGI LA++AA++ Y L L MP SMS+ERR LLK+ GA L+LT+   GMKGA+ KA EI++     Y +L+QF+NPA
Sbjct:    4 IYEDNSFTIGNTPLVRLNNIGNG---NILAKIESRNPSFSVKCRIGANMIWDAEKKGRLNKNIEI-IEATSGNTGIALAYVAAARNYSLTLIMPDSMSIERRKLLKSLGAHLILTNGKHGMKGAISKANEIVSLNTKRYLLLKQFENPA 148          
The following BLAST results are available for this feature:
BLAST of FC930307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_STAAW7.776e-3655.48Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAS7.776e-3655.48Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAR7.776e-3655.48Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAN7.776e-3655.48Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAM7.776e-3655.48Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAC7.776e-3655.48Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_FLAS37.776e-3654.11Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]
CYSM_BACSU8.598e-3551.33Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSK_HAEIN1.373e-3253.69Cysteine synthase OS=Haemophilus influenzae GN=cys... [more]
CYSK_BUCAP1.518e-3153.02Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]

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Properties
Property NameValue
Genbank descriptionC34006A10EF PostHarvC1 Citrus clementina cDNA clone C34006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930307 ID=FC930307; Name=FC930307; organism=Citrus clementina; type=EST; length=710bp
GACATCAGTTGGTCATCACAGTTAGTTCCCACAAAGTTCCAAAACAATGG
TCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGCTCCTCTCTGCATC
TCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCCCAT
AACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACAAAC
CCTGCAACTCTGTTGTGTGCAAGGCCGTCTCTGTGAAGCCGCAGACTGGG
ATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAAGAC
GCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACATTG
CTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGGATA
GGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCCTGG
AAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCCTTG
CTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCAGCC
TCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGAGCT
TGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCTGTCCAGAAAGCTG
AAGAAATTTTGAATAGCACACCTAATGCATATATGCTTCAGCAATTTGAC
AATCCTGCTA
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