FC930307

Overview
NameFC930307
Unique NameFC930307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:9..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 76/149 (51.01%), Postives = 101/149 (67.79%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 709
            I +D +  IG TP+V LN I  G   NI  K+E   P  SVK RIG +MI  AE+   I      L+E TSGNTGI LA++AAS+ Y+L LTMP +MS+ER+ +LK+ GAEL+LTD   GMKGA+ KA +I++  P+ Y +L+QF+NPA
Sbjct:    4 IYQDNSLTIGNTPLVRLNRIGNG---NILVKIESRNPSFSVKCRIGANMIWHAEKNNNINKNVK-LIEATSGNTGIALAYVAASRNYRLTLTMPETMSIERKKILKSLGAELILTDGRYGMKGAISKANDIISRNPSKYFLLKQFENPA 148          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 74/148 (50.00%), Postives = 93/148 (62.84%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDN 703
            + + E V++LIG TP+++L    K    N+ AK E + P  S+KDR  F MI DA     I    +I VE TSGNTGI LA I A  G K I  MP SMSLERR ++  FGA L LT +  GMKGAV KA EIL +TPN++M+ QF+N
Sbjct:    1 MKVHEKVSELIGNTPIIHL----KKFGINVFAKCEFLNPSHSIKDRAAFEMIKDALDSKKINQDTTI-VEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFEN 143          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 68/141 (48.23%), Postives = 89/141 (63.12%), Query Frame = 2
Query:  284 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNP 706
            Q IG TP+V L  +     + +  KLE   P  SVKDR   SMI +AE++G I PG  +L+E TSGNTGI LA IAA KGY++ L MP +MS ERR  ++A+GAEL+L    +GM+GA   A E+ N      +L QF+NP
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMAN-RGEGKLLDQFNNP 144          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  275 DVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGM---KGAVQKAEEILNSTPNAYMLQQFDN 703
            +V  L+G TP++ L  + K  G    I AKLE+  P  S+KDRI  SM+ +AE  G I P +S L+EPTSGNTGIGLA I A KGY+ I+T+P  MS E+  +LKA GAE++ T +A      +  +  A+++    P A +L Q++N
Sbjct:   13 NVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVAKKLEKEIPGAVILDQYNN 160          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 64/151 (42.38%), Postives = 93/151 (61.59%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGM---KGAVQKAEEILNSTPNAYMLQQFDNPA 709
            I +++   IG TP+V +N +       + AK E      SVKDRIG  MI DAE+ G I  G + L+EPTSGNTGIGLA  AA KGYK+I+T+P  MS E+  +LKA GAE++ T +       +  +  A+++ +  PN+++L Q+ NP+
Sbjct:   32 IMDNILDNIGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGVAKKLNSEIPNSHILDQYGNPS 181          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 2
Query:  284 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNP 706
            Q IG TP+V L  +     + I  KLE   P  SVKDR   SMI +AE++G I PG  +L+E TSGNTGI LA IAA KGY++ L MP +MS ERR  ++A+GAEL+L    +GM+GA   A   ++      +L QF+NP
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLA-LAMSERGEGKLLDQFNNP 144          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 70/154 (45.45%), Postives = 91/154 (59.09%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEEILNSTPNAYMLQQFDN 703
            I  D+ + IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MS+E+  +L+A GAE+V T      DS +   G    A  + N  PN+++L Q+ N
Sbjct:   73 ILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGV---AWRLKNEIPNSHILDQYRN 222          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 70/154 (45.45%), Postives = 91/154 (59.09%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEEILNSTPNAYMLQQFDN 703
            I  D+ Q IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MSLE+  +L+A GAE+V T      DS +   G   + ++     PN+++L Q+ N
Sbjct:   76 ILPDILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQ---EIPNSHILDQYRN 225          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.797e-24
Identity = 70/154 (45.45%), Postives = 91/154 (59.09%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEEILNSTPNAYMLQQFDN 703
            I  D+ + IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MS+E+  +L+A GAE+V T      DS +   G    A  + N  PN+++L Q+ N
Sbjct:   73 ILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGV---AWRLKNEIPNSHILDQYRN 222          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 67/154 (43.51%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCV-------ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYM-LQQFDNPA 709
            E + +L+G TP+V     VK C+         I AKLE   P  SVKDR   SM  DA ++GLI  GK ++++ TSGNTGI LA + A+ G  + L MPA++S ER+ ++KAFGA+L LTD  +G  GA+    E++   P  Y+ L Q++NPA
Sbjct:   23 ETILKLVGNTPLVR----VKKCLPEDIPEDVEIWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGK-VVIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAILFVRELVQKYPEKYVYLDQYNNPA 171          
The following BLAST results are available for this feature:
BLAST of FC930307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_BUCAI2.589e-3151.01Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]
CYSM_CAMJE1.855e-2950.00Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_ECOLI7.295e-2648.23Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CBS_YEAST9.528e-2643.92Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
CBS_DICDI1.625e-2542.38Cystathionine beta-synthase OS=Dictyostelium disco... [more]
CYSM_SALTY3.621e-2547.52Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CBS_RAT1.053e-2445.45Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CBS_RABIT1.376e-2445.45Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CBS_MOUSE1.797e-2445.45Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
CYSM_AQUAE4.003e-2443.51Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC34006A10EF PostHarvC1 Citrus clementina cDNA clone C34006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930307 ID=FC930307; Name=FC930307; organism=Citrus clementina; type=EST; length=710bp
GACATCAGTTGGTCATCACAGTTAGTTCCCACAAAGTTCCAAAACAATGG
TCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGCTCCTCTCTGCATC
TCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCCCAT
AACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACAAAC
CCTGCAACTCTGTTGTGTGCAAGGCCGTCTCTGTGAAGCCGCAGACTGGG
ATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAAGAC
GCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACATTG
CTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGGATA
GGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCCTGG
AAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCCTTG
CTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCAGCC
TCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGAGCT
TGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCTGTCCAGAAAGCTG
AAGAAATTTTGAATAGCACACCTAATGCATATATGCTTCAGCAATTTGAC
AATCCTGCTA
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