FC930307

Overview
NameFC930307
Unique NameFC930307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:9..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDN 703
            + +  D+T+LIG TP++ L          + AKLE+M P  S+KDR+G  +I DA   G + PG  +++E T+GNTGIGLA  A   G K I  +P   S E++ +++A GA ++ T    GM+GA+QKA ++     N+Y + QF N
Sbjct:    1 MTVITDITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPG-GVIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSYCVLQFKN 147          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVK-------GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            + + Q +G TP+V L  +         G    + AKLE   P  S+KDR    MI  AE  GL+ PG +IL EPTSGNTGI LA  A  KGY+LI  MP + S+ERR LL+ +GA+++ + +  G   AV  A+E+  + P+  ML Q+ NPA
Sbjct:    5 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPA 156          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVK-------GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            + + Q +G TP+V L  +         G    + AKLE   P  S+KDR    MI  AE  GL+ PG +IL EPTSGNTGI LA  A  KGY+LI  MP + S+ERR LL+ +GA+++ + +  G   AV  A+E+  + P+  ML Q+ NPA
Sbjct:    5 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPA 156          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 69/154 (44.81%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEEILNSTPNAYMLQQFDN 703
            I  D+ + IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA +GY+ I+ MP  MS E+  +L+A GAE+V T      DS +   G    A  + N  PN+++L Q+ N
Sbjct:   76 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGV---AWRLKNEIPNSHILDQYRN 225          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 68/154 (44.16%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEEILNSTPNAYMLQQFDN 703
            I  D+ + IG TPM+ +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA +GY+ I+ MP  MS E+  +L+A GAE+V T      DS +   G    A  + N  PN+++L Q+ N
Sbjct:   76 ILPDILKKIGDTPMIRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGV---AWRLKNEIPNSHILDQYRN 225          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 64/146 (43.84%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  278 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQF---DNP 706
            +   +G TP+V L  +       +  KLE   P  SVKDR   SMI  AE +G I PG + L+E TSGNTGI LA  AA KGYK+IL MP + + ER+  + A+GAEL+L    +GM+GA   A++ L       +L QF   DNP
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGARDLADK-LQREGRGKVLDQFANGDNP 151          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_PSESY (Cysteine synthase B (Fragment) OS=Pseudomonas syringae pv. syringae GN=cysM PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 63/148 (42.57%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQF---DNP 706
            + +   +G TP+V L  +       +  KLE   P  SVKDR   SMI  AE +G I PG + L+E TSGNTGI LA  AA KGY++IL MP + S ER+  + A+GAEL+      GM+GA   AE  + +     +L QF   DNP
Sbjct:    6 QTIADCVGNTPLVRLQRMAGNTSNTLLLKLEGNNPAGSVKDRPALSMITRAELRGQIHPGDT-LIEATSGNTGIALAMAAAIKGYRMILIMPDNSSAERKAAMTAYGAELISVSKDDGMEGARDLAER-MQAEGRGKVLDQFANGDNP 151          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_EMENI (Cysteine synthase OS=Emericella nidulans GN=cysB PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 60/146 (41.10%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  278 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL--VLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +T+ IG TP++ L  + +   +NI AK E   P  SVKDR    ++ DAE++GL+ PG ++ VE T+GNTGIGLA +  SKGYKL++ MP + S  +  LL+  GAE+  V   +    +    KA     S  NA    QFDN A
Sbjct:   36 LTEAIGNTPLIRLKRLSEETGSNILAKAEFQNPGGSVKDRAALYVVKDAEERGLLKPGGTV-VEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAEVYPVPAVAFDNPENYNHKARRHAESLDNAVWTNQFDNTA 180          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK1_SCHPO (Cysteine synthase 1 OS=Schizosaccharomyces pombe GN=cys11 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 65/158 (41.14%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  242 QTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL--VLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            QT + G  I       IG+TP++ LNT+      NI AK E   P  SVKDR  + ++ DAE+KG ++ G +I VE T+GNTGIGLA IA ++GYK ++ MP + S  +   LK  GAE+  V             +A     STPNA    QFDN A
Sbjct:    7 QTKVPG--IVSGFIGAIGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRGGTI-VEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVA 161          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_HELPY (Cysteine synthase OS=Helicobacter pylori GN=cysM PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 54/141 (38.30%), Postives = 87/141 (61.70%), Query Frame = 2
Query:  290 IGKTPMVYLNTIVKGCVANIA--AKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNP 706
            IG+TP+            N A  AKLE + P  SVKDR+G  +I +  + G IT  K+ ++EPT+GNTGI LA +A     K I  +P   S E++ +++A GA ++ T +++G+ GA++K++E+  S P++Y+  QF+NP
Sbjct:   11 IGRTPVFKFTNKDYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKIT-SKTTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENP 150          
The following BLAST results are available for this feature:
BLAST of FC930307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
MCCA_BACSU8.918e-2439.19O-acetylserine dependent cystathionine beta-syntha... [more]
CYSM_MYCTU1.165e-2342.48Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]
CYSM_MYCBO1.165e-2342.48Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CBS_HUMAN1.165e-2344.81Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
CBS_MACFA1.521e-2344.16Cystathionine beta-synthase OS=Macaca fascicularis... [more]
CYSM_PSEAE6.391e-2243.84Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CYSM_PSESY1.424e-2142.57Cysteine synthase B (Fragment) OS=Pseudomonas syri... [more]
CYSK_EMENI9.228e-2141.10Cysteine synthase OS=Emericella nidulans GN=cysB P... [more]
CYSK1_SCHPO2.685e-2041.14Cysteine synthase 1 OS=Schizosaccharomyces pombe G... [more]
CYSM_HELPY3.507e-2038.30Cysteine synthase OS=Helicobacter pylori GN=cysM P... [more]

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Properties
Property NameValue
Genbank descriptionC34006A10EF PostHarvC1 Citrus clementina cDNA clone C34006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930307 ID=FC930307; Name=FC930307; organism=Citrus clementina; type=EST; length=710bp
GACATCAGTTGGTCATCACAGTTAGTTCCCACAAAGTTCCAAAACAATGG
TCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGCTCCTCTCTGCATC
TCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCCCAT
AACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACAAAC
CCTGCAACTCTGTTGTGTGCAAGGCCGTCTCTGTGAAGCCGCAGACTGGG
ATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAAGAC
GCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACATTG
CTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGGATA
GGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCCTGG
AAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCCTTG
CTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCAGCC
TCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGAGCT
TGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCTGTCCAGAAAGCTG
AAGAAATTTTGAATAGCACACCTAATGCATATATGCTTCAGCAATTTGAC
AATCCTGCTA
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