FC930307

Overview
NameFC930307
Unique NameFC930307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:9..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 49/120 (40.83%), Postives = 79/120 (65.83%), Query Frame = 2
Query:  347 IAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNP 706
            I AKLE + P  SVKDR+G  +I +A +   IT   +I +EPT+GNTGI LA +A     K I  +P   S E++ +++A GA ++ T +++G+ GA++K++E+  S P++Y+  QF+NP
Sbjct:   31 IYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKITSTTTI-IEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENP 149          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 52/155 (33.55%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  272 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGK-SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL------VLTDSAKGMKGAVQKAEEILNSTP--NAYMLQQFDNPA 709
            E V +LIG TP+V + ++ K    NI AKLE+  P  S KDR+  ++I  AE+ G +  G+   + E TSG+TGI +A +  + GY+  +++P   SLE+  LL++ GA +       + D  + +  A +   E+  S     A    QF+N A
Sbjct:   47 EGVEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELKKSGNGIRAVFADQFENEA 201          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 50/149 (33.56%), Postives = 79/149 (53.02%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGA---VQKAEEILNSTPNAYMLQQFDN 703
            I+  + + +G TP++ + ++ +     I  K E M P  S KDR+   +I D E+KGL+  G S +VE T+G+TGI L  +  S+GY + L +P ++S E+  LL+  GAE  +     GM  A   +  A +       A+   QFDN
Sbjct:   38 ISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKG-STIVEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAETKIVPIV-GMNNANHFMHCAYQRCLGDDMAFYANQFDN 184          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: Y4XP_RHISN (Putative cysteine synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00730 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 54/149 (36.24%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  278 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL--VLTDSAKGMKGAVQK---AEEILNSTPNAYMLQQFDNPA 709
            VTQLIG+TP++ ++  V G  A +  K+E   P  S+KDR+  SM+  A Q G + PG +I VE +SGNTG GLA  A   G + I  +    + ++  +++A GAE+  V  D  +     V++   A ++    P A  + Q DNPA
Sbjct:    6 VTQLIGQTPVMSID--VPGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGTI-VESSSGNTGTGLALAALEFGLRFIAVVDHHAAPDKIRMMRALGAEIRYVEGDFREDEVAVVERQRLAAQLGAQLPGALFMNQSDNPA 151          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK2_SCHPO (Cysteine synthase 2 OS=Schizosaccharomyces pombe GN=cys12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 53/159 (33.33%), Postives = 79/159 (49.69%), Query Frame = 2
Query:  263 NIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILV-EPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL------VLTDSAKGMKGAVQKA--EEILNSTP-NAYMLQQFDNPA 709
            +I   V  LIG T MV + ++ +    +I AK E + P  S KDR+   MI  AE+ G + P +S  V E T+G+TGI +A +  S GY   + MP+  S E+  +L+  GA +       + D    +  A + A    +  S P   Y   QF+NPA
Sbjct:   41 DIVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQRVTPAPIVDPNHFVNTARRNAANHTVDESIPGKGYFANQFENPA 199          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSM_RALME (Cysteine synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=cysM PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGA---ELVLTDSAKG-MKGAVQKAEEILNSTPNAYMLQQFDNP 706
            +   + + IG TP+V L  +     A + AKLE++ P  SVKDR    ++     +G I P  S ++E +SGN  I LA I   KG +    +   +S     +L+ +GA   ++   DS  G ++  +++  ++L    +A  + Q+ NP
Sbjct:    2 VCNSIIESIGNTPLVQLRRLFGRADAEVFAKLELLNPAGSVKDRPARYIVEKGLTEGAIGP-HSHVIESSSGNLAIALAMICGLKGLRFTAVVDPKISPTNLKILRCYGAGIEQVTAKDSQGGYLETRIERVRQMLREQRDAIWINQYANP 151          
The following BLAST results are available for this feature:
BLAST of FC930307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSM_HELPJ8.638e-1940.83Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]
CYSK_YEAST2.601e-1533.55Putative cysteine synthase OS=Saccharomyces cerevi... [more]
CYSK_DICDI2.202e-1433.56Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
Y4XP_RHISN4.152e-1336.24Putative cysteine synthase OS=Rhizobium sp. (strai... [more]
CYSK2_SCHPO1.208e-1233.33Cysteine synthase 2 OS=Schizosaccharomyces pombe G... [more]
CYSM_RALME5.076e-1128.48Cysteine synthase OS=Ralstonia metallidurans (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34006A10EF PostHarvC1 Citrus clementina cDNA clone C34006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930307 ID=FC930307; Name=FC930307; organism=Citrus clementina; type=EST; length=710bp
GACATCAGTTGGTCATCACAGTTAGTTCCCACAAAGTTCCAAAACAATGG
TCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGCTCCTCTCTGCATC
TCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCCCAT
AACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACAAAC
CCTGCAACTCTGTTGTGTGCAAGGCCGTCTCTGTGAAGCCGCAGACTGGG
ATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAAGAC
GCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACATTG
CTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGGATA
GGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCCTGG
AAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCCTTG
CTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCAGCC
TCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGAGCT
TGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCTGTCCAGAAAGCTG
AAGAAATTTTGAATAGCACACCTAATGCATATATGCTTCAGCAATTTGAC
AATCCTGCTA
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