FC930316

Overview
NameFC930316
Unique NameFC930316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930316_ssr45 microsatellite FC930316_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12138 contig Ccv1_Contig12138:398..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR3_SHEEP (Solute carrier family 2, facilitated glucose transporter member 3 OS=Ovis aries GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  301 VGVACLGAILFGYHLGVVNGALEYLAKDL---GIAEN----------TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            + +A +G+  FGY+ GV+N A E + KD     + E           T L    V+    G  +GSF+ G   ++FGR  +  +  +   AG  L   C  A+SV+ +I+GR++           VP+YI EISP  +RGA G++NQL I +GIL A +
Sbjct:   14 ISIATIGSFQFGYNTGVIN-APEAIIKDFLNYTLEERSETPPSSVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAIAGGCLMGFCKIAESVEMLILGRLIIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQI 171          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR3_BOVIN (Solute carrier family 2, facilitated glucose transporter member 3 OS=Bos taurus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 55/159 (34.59%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  301 VGVACLGAILFGYHLGVVNGALEYLAKDL---GIAEN----------TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            + VA +G+  FGY+ GV+N A E + KD     + E           T L    V+    G  +GSF+ G   ++FGR  +  +  +   AG  L   C  A+SV+ +I+GR++           VP+YI EISP  +RGA G++NQL I +GIL A +
Sbjct:   14 ISVATIGSFQFGYNTGVIN-APEAIIKDFLNYTLEERSEPPPSSVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGRGNSMLIVNLLAIAGGCLMGFCKIAESVEMLILGRLIIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQI 171          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR1_RABIT (Solute carrier family 2, facilitated glucose transporter member 1 OS=Oryctolagus cuniculus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 54/172 (31.40%), Postives = 87/172 (50.58%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG----------IAENTVLQGWIVSSLL--AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---TAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +P  KK +G ++  VG A LG++ FGY+ GV+N   + + +             I   T+   W +S  +   G  +GSF+ G   ++FGR  +  +  +     A L      A+S + +I+GR +           VP+Y+ E+SP  +RGALG+++QL I VGIL A V
Sbjct:    2 EPSSKKVTGRLMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWIHRYGERILPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLAKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQV 173          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: MYCT_RAT (Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 51/171 (29.82%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  217 AQASAGDIEEATPFKPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            A     ++E A   + Q  ++   V      + LG  LFGY  GVV+GA+  L + + +    + Q  +VS  +  A V +  GG+L    GR     L +     G+ + A A + +T++ GR++           VP+YI+E+SP  +RG L ++N LFI  G   A V
Sbjct:   27 ASLQGAELERAARRQFQRDETPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMRLG--AMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASV 195          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: MYCT_MOUSE (Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 51/171 (29.82%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  217 AQASAGDIEEATPFKPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            A     ++E A   + Q  ++   V      + LG  LFGY  GVV+GA+  L + + +    + Q  +VS  +  A V +  GG+L    GR     L +     G+ + A A + +T++ GR++           VP+YI+E+SP  +RG L ++N LFI  G   A V
Sbjct:   27 ASLQGAELERAARRQFQRDETPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMRLG--AMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASV 195          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR3_CHICK (Solute carrier family 2, facilitated glucose transporter member 3 OS=Gallus gallus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  268 EKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLA----KDLGIAENTVLQGWIVSSLLA--------GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---AQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +KK +  ++  V VA +G++ FGY+ GV+N   + +     + L       +   +++SL +        G  +GSF+     ++FGR  +  L  V   AG  L A    A++V+ +IIGR +           VP+YISE+SP  +RGA G++NQL I VGIL A +
Sbjct:    4 KKKITASLIYAVSVAAIGSLQFGYNTGVINAPEKIIQAFYNRTLSQRSGETISPELLTSLWSLSVAIFSVGGMIGSFSVSLFFNRFGRRNSMLLVNVLAFAGGALMALSKIAKAVEMLIIGRFIIGLFCGLCTGFVPMYISEVSPTSLRGAFGTLNQLGIVVGILVAQI 172          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: ARAE_ECOLI (Arabinose-proton symporter OS=Escherichia coli (strain K12) GN=araE PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 49/165 (29.70%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  238 IEEATPFKPQEKKSSGVVLPFVGVAC-LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            I   +   P+  + +  +  FV VA  +  +LFG  +GV+ GAL ++     +     LQ W+VSS++ GA +G+   G L+ + GR  +    A+    G+   A A SV+ +I  RV+            PLY+SE++   +RG + S+ QL + +GI+ A +
Sbjct:    4 INTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSR--LQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFL 166          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: ARAE_ECO57 (Arabinose-proton symporter OS=Escherichia coli O157:H7 GN=araE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 49/165 (29.70%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  238 IEEATPFKPQEKKSSGVVLPFVGVAC-LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            I   +   P+  + +  +  FV VA  +  +LFG  +GV+ GAL ++     +     LQ W+VSS++ GA +G+   G L+ + GR  +    A+    G+   A A SV+ +I  RV+            PLY+SE++   +RG + S+ QL + +GI+ A +
Sbjct:    4 INTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSR--LQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFL 166          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR3_MOUSE (Solute carrier family 2, facilitated glucose transporter member 3 OS=Mus musculus GN=Slc2a3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 56/160 (35.00%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  301 VGVACLGAILFGYHLGVVNG-----------ALEYLAKDL---GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL-DAVPLAAGAFL--CATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            V VA +G+  FGY+ GV+N             LE   +DL   G+   T L    V+    G  +GSF+ G   ++FGR  +  L + + + AG  +     A+SV+ +I+GR+L           VP+YI E+SP  +RGA G++NQL I VGIL A +
Sbjct:   14 VTVATIGSFQFGYNTGVINAPETILKDFLNYTLEERLEDLPSEGLL--TALWSLCVAIFSVGGMIGSFSVGLFVNRFGRRNSMLLVNLLAIIAGCLMGFAKIAESVEMLILGRLLIGIFCGLCTGFVPMYIGEVSPTALRGAFGTLNQLGIVVGILVAQI 171          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR1_RAT (Solute carrier family 2, facilitated glucose transporter member 1 OS=Rattus norvegicus GN=Slc2a1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 53/172 (30.81%), Postives = 87/172 (50.58%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG----------IAENTVLQGWIVSSLL--AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ---SVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +P  KK +G ++  VG A LG++ FGY+ GV+N   + + +             I   T+   W +S  +   G  +GSF+ G   ++FGR  +  +  +     A L   ++   S + +I+GR +           VP+Y+ E+SP  +RGALG+++QL I VGIL A V
Sbjct:    2 EPSSKKVTGRLMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWNHRYGESIPSTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQV 173          
The following BLAST results are available for this feature:
BLAST of FC930316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GTR3_SHEEP6.051e-1533.96Solute carrier family 2, facilitated glucose trans... [more]
GTR3_BOVIN6.051e-1534.59Solute carrier family 2, facilitated glucose trans... [more]
GTR1_RABIT7.903e-1531.40Solute carrier family 2, facilitated glucose trans... [more]
MYCT_RAT1.032e-1429.82Proton myo-inositol cotransporter OS=Rattus norveg... [more]
MYCT_MOUSE1.032e-1429.82Proton myo-inositol cotransporter OS=Mus musculus ... [more]
GTR3_CHICK1.032e-1432.54Solute carrier family 2, facilitated glucose trans... [more]
ARAE_ECOLI1.032e-1429.70Arabinose-proton symporter OS=Escherichia coli (st... [more]
ARAE_ECO571.032e-1429.70Arabinose-proton symporter OS=Escherichia coli O15... [more]
GTR3_MOUSE1.348e-1435.00Solute carrier family 2, facilitated glucose trans... [more]
GTR1_RAT1.761e-1430.81Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionC34006B07EF PostHarvC1 Citrus clementina cDNA clone C34006B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930316 ID=FC930316; Name=FC930316; organism=Citrus clementina; type=EST; length=730bp
GACGCAATCAAAGCGAGTGTATGCTTTGACGCCCGCAATCGGAGGCGTGC
GTGCGTGTTGGCTGCTGGCTTTGCTAACACCAGAAGTGTTGCTTTGAATT
GTAATTTTACTAGTAATAATAGTATTTGCATGAGAGATATGGGAATGAAG
CTCACACGTGCCACTCAGGGCGTTGAAACTCTGTTTAGATCAACGGTTAA
GCCCCGATCGGTGAAAGCTCAAGCCTCCGCTGGAGACATTGAAGAAGCTA
CTCCTTTCAAGCCTCAGGAGAAAAAATCTTCTGGAGTAGTTTTGCCTTTT
GTTGGGGTTGCTTGTTTGGGAGCTATTTTATTTGGTTACCACTTAGGGGT
TGTAAATGGCGCTCTTGAATACCTTGCCAAGGACCTTGGGATTGCTGAAA
ACACTGTCCTGCAAGGATGGATTGTCAGCTCATTACTTGCTGGTGCCACT
GTTGGTTCTTTTACTGGAGGATCATTGGCTGACAAATTTGGCAGAACAAG
GACTTTTCAGTTAGACGCAGTTCCCCTCGCAGCTGGAGCATTTCTATGTG
CTACTGCCCAGAGTGTACAGACTATGATAATTGGCCGCGTACTGGCAGGC
ATTGGAATTGGCATCTCATCTGCCATTGTACCACTTTATATATCTGAGAT
CTCACCAAACTGAATTCGTGGTGCTCTTGGATCAGTAAACCAACTTTTTA
TATGTGTTGGGATTCTTGCAGCATTGGTAG
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